LOCUS       XM_015783597            1084 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group putative WUSCHEL-related
            homeobox 2 (LOC107275686), mRNA.
ACCESSION   XM_015783597
VERSION     XM_015783597.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089039) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015783597.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="5"
     gene            1..1084
                     /gene="LOC107275686"
                     /note="putative WUSCHEL-related homeobox 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 1 long SRA read, 7 Proteins, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107275686"
     CDS             126..986
                     /gene="LOC107275686"
                     /codon_start=1
                     /product="putative WUSCHEL-related homeobox 2"
                     /protein_id="XP_015639083.1"
                     /db_xref="GeneID:107275686"
                     /translation="

MAPAVQQQQSGGGGGSTGAAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRRLCISHHLLSCAHYYHHHLAAAAAVVPPPQLLPPLHPSSSSSSCGGGLIDHANSLLSPTSATTPTSAAAAAAAAAYTTSYYYPFTAAAAPPPPRTSPAASPLFHYNQGGGGVVLPAAEAIGRSSSSSDYSLGKLVDNFGVALEETFPAQPQQPATTMAMTAVVDTTAVAAAAGGFCRPLKTLDLFPGGLKEEQHDVV"

     misc_feature    201..380
                     /gene="LOC107275686"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     polyA_site      1084
                     /gene="LOC107275686"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

acaaactcctcctcttcttcttcttctcctagtaccctttctgtctcctcaccggcaatcctcccgtccggccaccgacgacacaagaaaacctagctacctaggtaggacaggaggagggatatatggcgccggcggtgcagcagcagcagagcggcggcggcggcggatcgacgggggcggcggcggtggggtcgacgacgcggtggtgcccgacgccggagcagctgatgatgctggaggagatgtacaggggagggctccggacgccgaacgcggcgcagatacagcagatcacggcgcacctctcgacgtacggccgcatcgagggcaagaacgtcttctactggttccagaaccacaaggcccgcgaccgccagaagctccgccgccgcctctgcatctcccaccacctcctctcctgcgcccactactaccaccaccacctcgccgccgccgccgccgtcgttccgccgccgcagcttctgccgccgctgcacccctcctcctcctcctcctcctgcggcggtggcctcatcgaccacgctaattcccttctctcccccacgtcggcgaccacccccacctccgccgccgcagcagcagcagcagcagcttacaccaccagctactactaccccttcaccgccgccgccgcaccgccaccgcccaggacgtcgccggcggcgagccccctcttccactacaaccagggaggcggcggcgtggtgttgccggcggcggaggcgatcgggcgttcgtcgtcgtcgtcggactactcgctggggaagctagtggacaacttcggggtggcgctggaggagacgttcccggcgcagccgcagcagccggcgacgacgatggcgatgacggccgtcgtcgacactacggcggtggcggcggcggcaggtggcttctgccggccgctcaagacgctggacctcttccccggcggcctcaaggaagagcagcatgacgtcgtctagccctaattagctactactactactgctcttaattactttattaattaacatgcatgatggatggatgggtcgatccattattatatattaattaacca

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