LOCUS       XM_015783597            1178 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group putative WUSCHEL-related
            homeobox 2 (LOC107275686), mRNA.
ACCESSION   XM_015783597
VERSION     XM_015783597.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029260.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015783597.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="5"
     gene            1..1178
                     /gene="LOC107275686"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:107275686"
     CDS             206..1066
                     /gene="LOC107275686"
                     /codon_start=1
                     /product="putative WUSCHEL-related homeobox 2"
                     /protein_id="XP_015639083.1"
                     /db_xref="GeneID:107275686"
                     /translation="

MAPAVQQQQSGGGGGSTGAAAVGSTTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRRLCISHHLLSCAHYYHHHLAAAAAVVPPPQLLPPLHPSSSSSSCGGGLIDHANSLLSPTSATTPTSAAAAAAAAAYTTSYYYPFTAAAAPPPPRTSPAASPLFHYNQGGGGVVLPAAEAIGRSSSSSDYSLGKLVDNFGVALEETFPAQPQQPATTMAMTAVVDTTAVAAAAGGFCRPLKTLDLFPGGLKEEQHDVV"

     misc_feature    order(281..289,293..295,347..349,365..367,416..418,
                     422..427,434..439,443..451,455..460)
                     /gene="LOC107275686"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    281..457
                     /gene="LOC107275686"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(281..283,290..292,425..427,434..439,446..448)
                     /gene="LOC107275686"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

ttagttgtggcaacctaagtcactcaaccaaacaacccctatatcactcactcacctctcgctgcctcagctcgcaaccaacaaactcctcctcttcttcttcttctcctagtaccctttctgtctcctcaccggcaatcctcccgtccggccaccgacgacacaagaaaacctagctacctaggtaggacaggaggagggatatatggcgccggcggtgcagcagcagcagagcggcggcggcggcggatcgacgggggcggcggcggtggggtcgacgacgcggtggtgcccgacgccggagcagctgatgatgctggaggagatgtacaggggagggctccggacgccgaacgcggcgcagatacagcagatcacggcgcacctctcgacgtacggccgcatcgagggcaagaacgtcttctactggttccagaaccacaaggcccgcgaccgccagaagctccgccgccgcctctgcatctcccaccacctcctctcctgcgcccactactaccaccaccacctcgccgccgccgccgccgtcgttccgccgccgcagcttctgccgccgctgcacccctcctcctcctcctcctcctgcggcggtggcctcatcgaccacgctaattcccttctctcccccacgtcggcgaccacccccacctccgccgccgcagcagcagcagcagcagcttacaccaccagctactactaccccttcaccgccgccgccgcaccgccaccgcccaggacgtcgccggcggcgagccccctcttccactacaaccagggaggcggcggcgtggtgttgccggcggcggaggcgatcgggcgttcgtcgtcgtcgtcggactactcgctggggaagctagtggacaacttcggggtggcgctggaggagacgttcccggcgcagccgcagcagccggcgacgacgatggcgatgacggccgtcgtcgacactacggcggtggcggcggcggcaggtggcttctgccggccgctcaagacgctggacctcttccccggcggcctcaaggaagagcagcatgacgtcgtctagccctaattagctactactactactgctcttaattactttattaattaacatgcatgatggatggatgggtcgatccattattatatattaattaaccatttctctgtctcca

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