LOCUS       XM_015778259            2346 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group probable
            plastid-lipid-associated protein 11, chloroplastic (LOC4336599),
            transcript variant X5, mRNA.
ACCESSION   XM_015778259
VERSION     XM_015778259.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089038) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015778259.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
     gene            1..2346
                     /gene="LOC4336599"
                     /note="probable plastid-lipid-associated protein 11,
                     chloroplastic; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 5 ESTs, 131 long SRA
                     reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 37 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:4336599"
     misc_feature    1
                     /gene="LOC4336599"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             34..699
                     /gene="LOC4336599"
                     /codon_start=1
                     /product="probable plastid-lipid-associated protein 11,
                     chloroplastic"
                     /protein_id="XP_015633745.1"
                     /db_xref="GeneID:4336599"
                     /translation="

MAPLVSHAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSDPSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGDVFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFGKGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG"

     misc_feature    172..669
                     /gene="LOC4336599"
                     /note="Region: PAP_fibrillin; pfam04755"
                     /db_xref="CDD:309752"
     polyA_site      2346
                     /gene="LOC4336599"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gtcaccgccaccacccaaaccaaatcctcgcccatggcgccactagtctcccacgcgaaaattctcgcgccgattccgaggggcaaccgccgcctcgcccccgcgccccctgccgccggcggcttcctccgcgccctcttcccctcacggcgctcccgccctccgccagagaaggacgagctcctccgcctcatcgccgaccaacgccgcggcctcgacacccagtccgacccctcccgcctcgccgacatcgtctcctgcatcgacgccctcgccgccgctgctcccggatccgataccgtttccgatgccgacaagctttccggtacgtggcggctcctctggaccaccgagcatgagcagctcttcatcgtgcgcaacgcccccttcttccgcaccgccgccggtgatgtgttccaggtaatcgacgtccccggtggcgccctcaacaacgtgatcaccttcccgccctctggcgcgttcgtcgtgaacggctccatcgagatccagccgccccagcgagtcaattttaggtttacacgcgctatgttgagagggagcaattgggaggtcccgtttccgccctttgggaaaggatggtttgacactgtctatttggatgatgacatccgcgtagcaaaggacatacgaggggactatttagttgttgaacgcgctccatattcatggaatggatagttgttaaaattcaaagttgattgaatgcatagccagtcttgtgatgtgccttgtgaatataagaagcagattgtcagagccttgtgctttctcagcaaagtgttaaccatcgtgctatgacatttcttttcctagacaatactatgttctcccggaattagatggtaagtttgattagtaatgcatgtgcagcaaggttcttcttccaaggaattgtctaggttaaataatacctaggtatcccctatgtgagagaacacaaacttgccaagtatttgatgtgcttttggacatatgaaaaagatgctgcccattacggtgaactacgttagcgaacttgacagcatattgttatggcccacgatatcaagagccatgatggaattgttgactgtttcagtaccttttgttagtattgttttgcctgttgcttccagctttaagtagtagtttttcacattgaagcaagttctcagcaaatcaggtcaatgaatgccatcatctgattaagatagtaaactatgtatggtcttgctttatctgtatcagggttccttttccttttatactcatgaggagtcaatgagatcaaatccaactttgctttgggaaaagtagcattgtagtgtcgcaagcttaatgatatgaaacattagattcagtttctgtaaccacttacccatgatttctaattctaggggtttcagatacagtgttatgtttcattccatctatcaattgaccactgaagatcagatcaactttttgcagggatcggactctatccttctactgcccccttggaatgctggcaggatttgtagtgcaatgagaagagaattcaatttgccatgtctgaattttcctggttatttttgtttgctcgtttctttatctaggaaaaattctgctcaatacctggtttaatttttgctgcatcgtcaatgctccctgtcatttaagaaaagtaagtgaaaaggtatctatgtgatagattgattgaacatcactacttctccatgatattccaggcctgaacagaagcactgaagcaaaatacttttgaaatgctttcgttggtcctactgttgaactgaatagcaagttctcctttcaacagcttgtttcaagtgtctagtctgataattgcttccttgtactagactactgcaggttctagtcgcagtcgaacaacatatggtgaggctttaggaggacaggccctccctgaccaagtactggagccacttcaaaggatagaaggcaaaggctccccatgtgaaaaaggacgctccatgaccctgccatgtgtggtcatctgcgatttggtgtcccatggacagtgatgcactgattccacccttcgagtcttaaaagcaatccaagccgcccggatggtagccagcagtccagcaccaagagctccaagacacggcggaccgagccagccggagggaggggatgattgagacagcggcctctgcggcgacgacagtggatcgtgagcagatttatcctgccacgagataagtacattgtactgctgactccgtttcaaaatatagctatttttagcataatactttgttctaaaataaagctatttcttcatctacgttctcaatcaatcacaaccattcttttgca

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