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2024-03-28 19:10:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015776027            2998 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group apoptotic chromatin
            condensation inducer in the nucleus (LOC4332988), transcript
            variant X1, mRNA.
ACCESSION   XM_015776027
VERSION     XM_015776027.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029258.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015776027.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..2998
                     /gene="LOC4332988"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 67 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 97 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4332988"
     CDS             420..2567
                     /gene="LOC4332988"
                     /codon_start=1
                     /product="apoptotic chromatin condensation inducer in the
                     nucleus"
                     /protein_id="XP_015631513.1"
                     /db_xref="GeneID:4332988"
                     /translation="
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKDELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVSQETTVSITEVHKETVVQVTQEATPPITEVSQSLTVSAAEEPPKVNAVATHEAPLSKAPTDKGEEPPIAGDVSTVENEHLHAENNTEPFVEKTQDVGTNEAIGALDMTSADVESDMTSSDIKIDATEASKVQQHDTVATTVDAIPTDADPMDTDVATEKAVLNDLGDTTSVYDEERKDSELTNEDEKPIAPKPNDQVPEVSPDLGSPIKCESISSDDISTNKKNNIKDNLNANNFDLELEAKPEMVKPSSGITSIGGDLQPLDDDKDLGKNQSSLEYIDSTANVDEGGSPEKLNLDRSSGDESMEEDVMEIKQVESNIKSEGTAELSSDHVKEVSLPDTVVDNSSVDTKEVIADEKTAASTEKRKLEAEETVAATEPIKRQRRWAADGAKVPERQPISHSGSDAPKENFQPALKRSFGRSDSTASGDSPKERVVPPSQKPATASLRIDRFVRPFTLKAVQELLGKTGSLCSFWMDHIKTHCYVTFSSVEEAVATRDAVYDLQWPPNNGNRLVAEFVDPQEVKLKLEPPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLFRKTHSSPRIYYLPLSEEEVAAKLASQGKGKRE"
     misc_feature    453..545
                     /gene="LOC4332988"
                     /note="Putative DNA-binding (bihelical) motif predicted to
                     be involved in chromosomal organisation; Region: SAP;
                     smart00513"
                     /db_xref="CDD:128789"
     misc_feature    <588..1094
                     /gene="LOC4332988"
                     /note="ribonuclease E; Reviewed; Region: rne; PRK10811"
                     /db_xref="CDD:236766"
     misc_feature    <939..1778
                     /gene="LOC4332988"
                     /note="Midasin, AAA ATPase with vWA domain, involved in
                     ribosome maturation [Translation, ribosomal structure and
                     biogenesis]; Region: MDN1; COG5271"
                     /db_xref="CDD:227596"
     misc_feature    1974..2228
                     /gene="LOC4332988"
                     /note="RNA recognition motif (RRM) found in apoptotic
                     chromatin condensation inducer in the nucleus (acinus) and
                     similar proteins; Region: RRM_ACINU; cd12432"
                     /db_xref="CDD:409866"
     misc_feature    <2385..2540
                     /gene="LOC4332988"
                     /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif;
                     pfam16294"
                     /db_xref="CDD:435259"
ORIGIN      
cctctcgctgtcccccgcaccacacgcgccccgtaccccgcacatccacctcctctctctcctccctccgcgccgcgcgcccccaaaccctagaactccacgcacgcgacgcgagctccaatcccacccggtgttccccccctccccctgattcgcctgcaaccaccactcccctctccaatctaatcctcttccggctgtgccgtcctcctgctccgcttcccttttttccgcgagattttgttctgtttgggggagaaactttttttgggtgcttttttttttctttggttgtgttgtttcaggagcgcgcgtggcctcggaggattcgcggcggctgggttttggcgcttccgtgaagggtcgtgcccctcccgtctccgacgtccgatctctgtgcgccggggttgtcagctacaatgtcatcataccctgtgctaaacaacagacctattgatcaatggagagttactgatctgaaggatgaacttcgtaagaggaggctccctgttaaaggcttgaaagatgaacttgtaaggcgactcttcgagtcaattcagagtgaaaaagaagaagaagaagaagaacaagataatgaaactgtcgaagtgaatccagcagctaaccaggcatctgaaatacagagtgtttctcaggaaactacagtttctattacagaagttcacaaggaaactgtggttcaagtaactcaggaagctacacctcctatcactgaagtaagtcagtcgctcacagtttcagctgccgaagagccccccaaggttaacgcggtggcaacccatgaagctcccttaagcaaggccccaacagacaaaggagaagagccaccaattgcaggagatgtttccacagtggaaaacgaacatcttcatgctgaaaataatactgaaccttttgttgagaagacacaagatgttggcaccaacgaagcaattggtgcccttgatatgaccagtgctgatgtagagtcagacatgacctcttctgatatcaagatagatgctactgaagccagcaaagttcaacaacatgacacagtagcaacaactgtggatgccatcccaacagatgctgatcctatggatactgatgttgcaactgagaaggcggttcttaatgatttgggtgacactacttcagtgtatgatgaagagcgcaaagattctgagctcacgaatgaggacgagaagcccatcgcaccaaaaccaaatgatcaggtacctgaggttagcccagatttagggtctccaattaagtgtgagtcaatttctagcgatgatatatcaactaacaaaaagaataatataaaggataatttgaatgctaataattttgatttagaactagaggctaagccagagatggtaaaaccatcttctggcattacttccataggtggagatttgcagccattggatgatgacaaagatctgggtaaaaaccagtcatctttggaatacatagattccacagctaatgtggatgaaggcggctctccagagaaactaaatttagacaggagttcaggtgatgagtcaatggaggaggatgtcatggagattaagcaagttgagtccaacattaaatctgaaggaacagctgagcttagctcagatcatgtgaaagaggtgtccctccctgatactgttgtggacaattcctctgttgacacgaaagaagttatagctgatgaaaagacagcagcttcaactgaaaagaggaaactcgaagctgaagaaactgttgctgccactgagccaatcaaacgccagcgtcgatgggctgcagatggtgccaaagttccagagagacaaccaataagtcatagtggctctgatgctcctaaggaaaattttcagcctgctttaaaacgatcttttggcaggtctgattcaacagctagtggagattccccaaaggagcgggttgtgccaccatctcagaaacctgcaacagcttccttgagaattgatcgatttgtaaggccatttacgctgaaggctgtgcaagaacttcttggtaaaactggatctctttgtagtttctggatggatcacatcaagacccactgctatgttacgttttcatcagtagaggaagctgtggctactcgggatgctgtctacgatttgcagtggccaccaaacaacggcaatcgtttggttgctgaatttgttgatccccaggaagtgaagctcaaacttgaacctcctccgccagcggcggctcctattagccctgctactacaccaaaggagccaccctttcaacaggctcaggctaatcaaaacatgcctcgtcaagccgctgcaccaagggagcacttgccacctccaccgcctcttactacgcttcctacatctgactcaggatcagcaaaggagaggcttccacccaccccaaagaaacagccggaacctcctgttgtgacactcgatgatctcttcaggaagacacattcttctcctaggatttattaccttcctttatcagaagaggaagtggcagccaagcttgcttcacagggcaaaggcaagagagaatgaggagctgtagcctctttttttcttgtcgctagtatgggggcatgtggaggtatgtagtggttacatacttgcatgtgtacgctgcaggttgtagggctgagagcctgagatctttcttcctaactttccaggaaaaatggtgtattacagctcagcagctggctcttgcagttcatttgaaataacaggaggcggcgactgctgttaggtattttgctgcaagagagagtagctgtaggctagtgtagaagcagcaaatgtattttctacagaaggaatgttttttgttctatcactgtctagtgtgttgcgtctaactcttgttacttggaacgtctgacgtctgagattatggttggtttaaacaatcgggtatggttgcgacttgtgactcctgttataatttaattgcgaggatatttattgtcaca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]