2024-03-28 19:10:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015776027 2998 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group apoptotic chromatin condensation inducer in the nucleus (LOC4332988), transcript variant X1, mRNA. ACCESSION XM_015776027 VERSION XM_015776027.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015776027.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2998 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="3" gene 1..2998 /gene="LOC4332988" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 67 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 97 samples with support for all annotated introns" /db_xref="GeneID:4332988" CDS 420..2567 /gene="LOC4332988" /codon_start=1 /product="apoptotic chromatin condensation inducer in the nucleus" /protein_id="XP_015631513.1" /db_xref="GeneID:4332988" /translation="
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKDELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVSQETTVSITEVHKETVVQVTQEATPPITEVSQSLTVSAAEEPPKVNAVATHEAPLSKAPTDKGEEPPIAGDVSTVENEHLHAENNTEPFVEKTQDVGTNEAIGALDMTSADVESDMTSSDIKIDATEASKVQQHDTVATTVDAIPTDADPMDTDVATEKAVLNDLGDTTSVYDEERKDSELTNEDEKPIAPKPNDQVPEVSPDLGSPIKCESISSDDISTNKKNNIKDNLNANNFDLELEAKPEMVKPSSGITSIGGDLQPLDDDKDLGKNQSSLEYIDSTANVDEGGSPEKLNLDRSSGDESMEEDVMEIKQVESNIKSEGTAELSSDHVKEVSLPDTVVDNSSVDTKEVIADEKTAASTEKRKLEAEETVAATEPIKRQRRWAADGAKVPERQPISHSGSDAPKENFQPALKRSFGRSDSTASGDSPKERVVPPSQKPATASLRIDRFVRPFTLKAVQELLGKTGSLCSFWMDHIKTHCYVTFSSVEEAVATRDAVYDLQWPPNNGNRLVAEFVDPQEVKLKLEPPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSAKERLPPTPKKQPEPPVVTLDDLFRKTHSSPRIYYLPLSEEEVAAKLASQGKGKRE"
misc_feature 453..545 /gene="LOC4332988" /note="Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation; Region: SAP; smart00513" /db_xref="CDD:128789" misc_feature <588..1094 /gene="LOC4332988" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature <939..1778 /gene="LOC4332988" /note="Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]; Region: MDN1; COG5271" /db_xref="CDD:227596" misc_feature 1974..2228 /gene="LOC4332988" /note="RNA recognition motif (RRM) found in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins; Region: RRM_ACINU; cd12432" /db_xref="CDD:409866" misc_feature <2385..2540 /gene="LOC4332988" /note="RNSP1-SAP18 binding (RSB) motif; Region: RSB_motif; pfam16294" /db_xref="CDD:435259" ORIGIN
cctctcgctgtcccccgcaccacacgcgccccgtaccccgcacatccacctcctctctctcctccctccgcgccgcgcgcccccaaaccctagaactccacgcacgcgacgcgagctccaatcccacccggtgttccccccctccccctgattcgcctgcaaccaccactcccctctccaatctaatcctcttccggctgtgccgtcctcctgctccgcttcccttttttccgcgagattttgttctgtttgggggagaaactttttttgggtgcttttttttttctttggttgtgttgtttcaggagcgcgcgtggcctcggaggattcgcggcggctgggttttggcgcttccgtgaagggtcgtgcccctcccgtctccgacgtccgatctctgtgcgccggggttgtcagctacaatgtcatcataccctgtgctaaacaacagacctattgatcaatggagagttactgatctgaaggatgaacttcgtaagaggaggctccctgttaaaggcttgaaagatgaacttgtaaggcgactcttcgagtcaattcagagtgaaaaagaagaagaagaagaagaacaagataatgaaactgtcgaagtgaatccagcagctaaccaggcatctgaaatacagagtgtttctcaggaaactacagtttctattacagaagttcacaaggaaactgtggttcaagtaactcaggaagctacacctcctatcactgaagtaagtcagtcgctcacagtttcagctgccgaagagccccccaaggttaacgcggtggcaacccatgaagctcccttaagcaaggccccaacagacaaaggagaagagccaccaattgcaggagatgtttccacagtggaaaacgaacatcttcatgctgaaaataatactgaaccttttgttgagaagacacaagatgttggcaccaacgaagcaattggtgcccttgatatgaccagtgctgatgtagagtcagacatgacctcttctgatatcaagatagatgctactgaagccagcaaagttcaacaacatgacacagtagcaacaactgtggatgccatcccaacagatgctgatcctatggatactgatgttgcaactgagaaggcggttcttaatgatttgggtgacactacttcagtgtatgatgaagagcgcaaagattctgagctcacgaatgaggacgagaagcccatcgcaccaaaaccaaatgatcaggtacctgaggttagcccagatttagggtctccaattaagtgtgagtcaatttctagcgatgatatatcaactaacaaaaagaataatataaaggataatttgaatgctaataattttgatttagaactagaggctaagccagagatggtaaaaccatcttctggcattacttccataggtggagatttgcagccattggatgatgacaaagatctgggtaaaaaccagtcatctttggaatacatagattccacagctaatgtggatgaaggcggctctccagagaaactaaatttagacaggagttcaggtgatgagtcaatggaggaggatgtcatggagattaagcaagttgagtccaacattaaatctgaaggaacagctgagcttagctcagatcatgtgaaagaggtgtccctccctgatactgttgtggacaattcctctgttgacacgaaagaagttatagctgatgaaaagacagcagcttcaactgaaaagaggaaactcgaagctgaagaaactgttgctgccactgagccaatcaaacgccagcgtcgatgggctgcagatggtgccaaagttccagagagacaaccaataagtcatagtggctctgatgctcctaaggaaaattttcagcctgctttaaaacgatcttttggcaggtctgattcaacagctagtggagattccccaaaggagcgggttgtgccaccatctcagaaacctgcaacagcttccttgagaattgatcgatttgtaaggccatttacgctgaaggctgtgcaagaacttcttggtaaaactggatctctttgtagtttctggatggatcacatcaagacccactgctatgttacgttttcatcagtagaggaagctgtggctactcgggatgctgtctacgatttgcagtggccaccaaacaacggcaatcgtttggttgctgaatttgttgatccccaggaagtgaagctcaaacttgaacctcctccgccagcggcggctcctattagccctgctactacaccaaaggagccaccctttcaacaggctcaggctaatcaaaacatgcctcgtcaagccgctgcaccaagggagcacttgccacctccaccgcctcttactacgcttcctacatctgactcaggatcagcaaaggagaggcttccacccaccccaaagaaacagccggaacctcctgttgtgacactcgatgatctcttcaggaagacacattcttctcctaggatttattaccttcctttatcagaagaggaagtggcagccaagcttgcttcacagggcaaaggcaagagagaatgaggagctgtagcctctttttttcttgtcgctagtatgggggcatgtggaggtatgtagtggttacatacttgcatgtgtacgctgcaggttgtagggctgagagcctgagatctttcttcctaactttccaggaaaaatggtgtattacagctcagcagctggctcttgcagttcatttgaaataacaggaggcggcgactgctgttaggtattttgctgcaagagagagtagctgtaggctagtgtagaagcagcaaatgtattttctacagaaggaatgttttttgttctatcactgtctagtgtgttgcgtctaactcttgttacttggaacgtctgacgtctgagattatggttggtttaaacaatcgggtatggttgcgacttgtgactcctgttataatttaattgcgaggatatttattgtcaca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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