2024-04-29 09:59:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015774409 3485 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group protein argonaute 12 (LOC107275269), mRNA. ACCESSION XM_015774409 VERSION XM_015774409.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029258.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015774409.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3485 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="3" gene 1..3485 /gene="LOC107275269" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107275269" CDS 123..2867 /gene="LOC107275269" /codon_start=1 /product="protein argonaute 12" /protein_id="XP_015629895.2" /db_xref="GeneID:107275269" /translation="
MKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAPPPATLPPSSSKAVTFPARPDVGTIGRRCRVRANHFLVQVADKDIYHYDVVITPESTYRERNRSIINKLVALHKQFLDGRLPVYDGRKSIYTAGPLPFKTKDFVVKHINPLRGNQREEEYKVTIKQASKTDLYSLKQFLVGRQRELPQDTIQALDIALRECPTSVNFTCDRYVSISRSFFSQSFGHGGEIGSGTECWRGYYQSLRPTQMGLSLNIDISATAFYKAQPVMDFAVQYLNIRDVSRRLSDQDRIKLKKALKGVQIVATHWKEKSIRYKITGIPSAPMNELMFDLDGNRISVVQYFKKQYNYSLKHVNWPCLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEHQVTNILRMTCERPAQRESSIIEIVNTNSYGNDDCAKEFGIKVANQLAVVDARVLPTPRLKYHDSGREKVCNPSVGQWNMINKRMVNGGCINHWTCLSFASRMHVNDIRMFCEDLVGMCNNIGMQMNTRPCVDIIQGQQRNIEGAIRNIHRQSSEKLDQQDLTGQQLQLLIVILTEISGSYGRIKRICETEVGVITQCCAPKSLQKGGKQYLENLALKMNVKVGGRNTVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSRIIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENRRDMMDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQGSSSSVTTRTDRSTKPLPEIKENVKRFMFYC"
misc_feature 300..2864 /gene="LOC107275269" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" ORIGIN
gacgaggcggcgtgcaggtgcagcccaatgcggcggcgcgtcgacccgtaggcggcgggcgcggcggcgtcggagtgccggcgcctgcgccggcggttgcggtgggggctctgtgcggcgagatgaaggggaagatggttgtgtcgggtggagcgccgccagcaggccagggttcgtcgttggcggcggcgcagggcacggacaatgtcaagagagagccatctcaggtcgccgcaccggcgcccgcgcccccgcccgcgacgctgccgccgtcgtcgagcaaggcggtgaccttcccggcgcgtccggacgtcggcacgatcgggaggcggtgccgcgtccgcgccaaccatttcctggtgcaagtcgcggacaaggacatctaccactacgacgtggtgatcactccagaatcaacttatcgtgagagaaatagatcaataatcaacaaacttgttgcgttgcacaaacaattcttggatggtaggttacctgtctatgatggaagaaagagcatatatactgcaggtccactacctttcaaaaccaaagactttgttgtcaagcacattaatcctttgaggggtaaccaacgggaggaggaatacaaggtgaccataaagcaagcctccaaaacagatctgtacagccttaagcagtttttggttggaaggcagagggagttgccacaggacactattcaagctcttgacattgctcttagggaatgccctacctcagtaaattttacttgtgacaggtatgtatctatctcaaggtcatttttctcccaatcatttgggcatggtggcgagattggtagtggtacagagtgttggagggggtattaccaaagtctgcgccccacgcagatgggactgtcgctaaatatcgatatttctgcaacagcattttacaaggcccagccagtgatggactttgcagttcagtatttgaacatccgagatgtttcaaggcgcttgtctgatcaagatcgtattaaactgaaaaaggccctaaaaggagtccaaattgtggcaactcactggaaagagaaatccatacgttacaagatcactggaataccctcagctccaatgaatgaattgatgtttgatctagatggaaacaggatatcagtcgtccaatactttaagaaacagtacaattactccttaaaacatgttaattggccatgccttcaagctggcagtgatagcagaccaaaatatttgcctatggaggtctgcagtatacttgaaggacaacggtattcgaagaagctaaatgagcatcaagttacaaacattctaaggatgacatgtgaacgacccgcacaaagggagagcagtatcatagagattgttaatacgaactcttatggcaatgatgattgtgcaaaagaatttggcatcaaagtcgctaaccaacttgccgtggttgatgcccgtgtactgcctacccctaggcttaaatatcatgactctggaagagaaaaagtatgtaatccttccgttggacaatggaacatgattaacaagaggatggtaaatggaggatgtatcaaccattggacctgcctatcttttgcttctcggatgcatgtaaatgacattaggatgttttgtgaagacctggttggcatgtgcaataatattggcatgcaaatgaatacgagaccatgtgtggatatcatacaaggacagcaacgcaacatcgagggtgcaatcagaaatatccataggcaatcttcagaaaagcttgaccagcaagacctgacagggcagcaacttcagttattaattgtaatattgactgaaattagtggttcttatggaaggataaaacgaatttgtgaaacagaggttggtgtgataactcaatgctgtgcacccaagagtcttcagaaaggtgggaaacagtatcttgaaaatctggccctaaaaatgaatgttaaggtcggggggcgaaatacagtacttgaagatgcgttgcacaagaaaataccaattctgacagatcgtcctacgatagtgtttggagcggatgttacacatccatctcctggggaggatgcttctccatccattgcagcggttgttgcatccatggattggccagaagttacaaagtacaaatgcttggtatctacacaaagtcatagggaagaaatcatatctaatctttacacagaagtgaaagatccattgaagggaattattagaggtggaatgattagggagttgctcaggtctttctaccaagaaactggacagaaacctagccggattatattttatcgagatggtatcagcgagggacagtttagccaagtgttgctttatgaaatggatgcaattcgcaaggcatgtgctagtttgcaggagggctaccttcctccagttacatttgttgttgtccagaaaaggcatcacacccgcctatttccagaaaatcgtcgagatatgatggatagaagcggaaatatccttcctggaactgttgttgacacaatgatctgccatccgagtgagtttgacttttacctctgtagccattctggtatcaaggggacgagccgtccaacacattatcatgttcttttagatgaaaatgggttcaaggctgatacgctgcaaaccctaacctacaatcttagctacacctatgcccgatgcacccgagcagtctccatagttcctccagcatactatgcgcatctgggagccttccgagcacgctactacatggaggacgagcattctgatcagggctcttcttcctccgtaacgacgcgaacggatcgatcgacgaagccgcttcctgaaatcaaggagaatgttaagcggttcatgttctactgctgaaggggttaagtttgatcctgttgaatagaagctcatgttctacaactcaagtgttgggtcttttgcaagaactgtctgtaacttttgcgggtgttagatgtctctagtggttgtgcaagtgcgaaaaccccctccccaaacagtctgggatgatgggttttacttagcatattgtgtttagtaaaaactcgtatctgcactctactaggtaccttcctgtctgtctagtctggtagtctggagaaggaagttactgctatgtggtacttggctgtattttgctgaaactcctttgtgtttggctgaatttccgaagttatgtcaaggccaagttatgtgatctgtaaagcctgaaactacaacctagttgctggcttgctgcagacaaattccttctggttacagccgaaaaatcctttccagtcgttgcagctgaaaatcaagtccggatatatctcgatcttgactgaaataattgcacttatactactaggttaaaccacgagctgataatctctgttgcatcctgaccacgcaacgcaacgccctgatcatgcttccagtaatcactaagcagcttcgtctagacggcagcagctgtatcactcgtccatccgt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]