LOCUS       XM_015772706            2859 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox protein BEL1
            homolog (LOC4331452), mRNA.
ACCESSION   XM_015772706
VERSION     XM_015772706.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029258.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015772706.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..2859
                     /gene="LOC4331452"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4331452"
     CDS             648..2423
                     /gene="LOC4331452"
                     /codon_start=1
                     /product="homeobox protein BEL1 homolog"
                     /protein_id="XP_015628192.1"
                     /db_xref="GeneID:4331452"
                     /translation="

MAHDPNLGFADYFSAADASASSVTTLMPAMDEAAPELFGLQAGMELLGVRGLGMSMMPGAAGKVAALVADAGDDGGGGSTMRFLSEQHQQPSQAPLSLSLCRPDGVLHLGGAARPQHQLAPAAPWMTHHDASSSAPQVHGAWHLRSSRFLLPTQQLLQEFCSLPVDSTKRGNGAKAATQQEDGRGDGSSSSSASWTPSPQIQAMEALELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAGAYTAVAARTISRHFRSLRDGIVAQLQAARKALGEKDVSAAGTTRGQTPRLRVIDQCIRHHKSLQGVAAMDSHPWRPQRGLPDRAVTILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYVEEMKGQDGGDGSGGQGSLNPKPTCSHASEARGGQQLVVGDGDGGEQKPTRAQLRHDAGSLASVVNVDVAAGAGGVARLHQAENFGIMDHLDFDAYDDSHHQQQHGGFGGVSLTLGLQQHGSHGGGGVNIAFGAPGSAHGGAGFLYPGEQMAPDAMHPGHGHHVVGGQFGVAMDGDAASHAQERYRSLSAGFHLLRDLAG"

     misc_feature    1074..1466
                     /gene="LOC4331452"
                     /note="Associated with HOX; Region: POX; pfam07526"
                     /db_xref="CDD:429514"
     misc_feature    order(1620..1634,1638..1640,1698..1700,1716..1718,
                     1755..1757,1761..1766,1773..1778,1782..1790,1794..1799)
                     /gene="LOC4331452"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1626..1628,1635..1637,1764..1766,1773..1778,
                     1785..1787)
                     /gene="LOC4331452"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1674..1790
                     /gene="LOC4331452"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

gagtagcacagagtgtgagtagacgcaataagccctgcagacgccgcatgtacagactacagctcgagaagacgcactggaactagtctcctgcagatatttggatgggatgtagcagttgcagcggcagcggcagaaggagaagttgctggtaagaagtagcgcgcagctgctcctgcgcgcgcatgtacagggcgcgaggcgaaagcttgacgcggcaaccaccacccaccccccaccccgcccggctcagacctcgccatcgatcgacctgctcgcgctctctccctccctccctccccattgatcccatgacaaagcaagattcctgtgtttctgaggcttagctgaggaaggattcggcctacctgctctcttctcctgcccggccgattgctacgacttgcaacacgcatcaccatagtaatagtatcgtcgtgttcactctccgacgacttaattgtgtgcgtgttgtatttcccaccgtcttgtcacttcatcacacatctggctacatcgatggatcactggtgctactagctagctagctcgctagttactcgattactggctgaattttcgcttctgtctccatctattttacacaaattaaagcttttggcgatcggaggaattgaaacaccgatatggcgcatgatccgaacctggggttcgcggattacttctcggcggcagatgcatcggcgtcgtcggtcacgacgctgatgccggcgatggacgaagcggcgccggagctgttcgggttgcaggccgggatggagcttctcggcgtgcgcggtctgggtatgagtatgatgcccggcgcggcaggcaaggtcgccgcgctggtggccgacgctggggacgacggcggcggcggctccaccatgcgcttcctcagcgagcagcaccaacagccgagccaggcgccgctgtcgctgtcgctgtgccgcccggacggcgtgctgcacctcggcggcgcggcgcggccgcagcaccaactggcgcccgcggcgccatggatgacgcaccacgacgcgtcgtcgtcggcgccgcaagtgcacggcgcgtggcacctgcgcagctcgaggttcctcctcccgacgcagcagctcctccaagaattctgcagcctccccgtggacagcaccaagcgcggcaacggcgccaaggcagcgacgcagcaagaagacggccgcggcgacgggtcgtcgtcgtcgtcggcctcgtggaccccgtcgccgcagatccaggccatggaagccctggagctgcagaggctcaaggacaagctctacatcatgctcgaagaggtggacaggaggtacaggaggtactgcgagcagatgagggcggtggccggggggttcgaggcggtggccggggagagggcggcgggggcgtacacggcggtggcggcgaggacgatatcgaggcacttccggagcctgagggatgggatcgtggcgcagctgcaggcggcgaggaaggcgctcggggagaaggacgtgagcgcggccgggacgacgcgggggcagacgccgcggctcagggtgatcgaccagtgcatcaggcaccacaagtcgctgcagggcgtcgccgccatggacagccacccgtggcgcccccagcgcggccttcccgaccgcgccgtcaccatcctccgtgcctggctcttcgagcacttcctgcacccgtatccaagcgacgtggataagcacatcctggctcgacagacgggcctctcacgtagccaggtgtccaactggttcatcaatgcgagggttcggctgtggaagccaatggtggaggagatgtacgtcgaggagatgaagggccaggacggcggcgacggcagcggtggacaggggagcctaaaccctaagcctacctgcagccacgcctccgaggcgcgcggcggccagcagctggtcgtcggcgatggcgacggcggcgaacagaagccgacgagggcgcagcttcgccacgacgccgggtcgctggcctccgtcgtcaacgtcgacgtcgcggccggcgcgggcggcgtggcccggctgcaccaggcggagaacttcggcatcatggaccacctcgacttcgacgcgtacgacgacagccaccaccagcagcagcacggcgggttcggcggcgtgtcgctgacgctcgggctgcagcagcacggctcccacggcggtggcggcgtgaacatcgcgttcggggcgccggggtccgcgcacggcggcgccgggttcttgtacccgggcgagcagatggcgcctgacgccatgcatccggggcacggccaccacgtcgtcggcggacagttcggcgtggccatggacggcgacgccgcctcgcacgcgcaagagcggtaccggagcctaagcgccggcttccacctgctccgcgacttggccggatgatccatgcggcgaactactcagttcatcgcacgtacgcatatatatgcattccgtgtactgtactagcagacgatttggatgtcgcagcggcagcggccgcggcggtggcgactaggtagggatcctcgcgcgcggccggcgctgcggcgtgcattggttgggcaaccgaattaagcgtttttgttggtggtggtccttgattttaccgacctataggtacagttcgtatatatctctcgcgatcgatcgtacaccagcaggggagtagcccagtagatcgtcgtcgatggcgctttcgtgtggttcggaagcgggcagtttattttagcctaccggcccggcatcggttgccgggggttgtgtggtcgtgtgttgtgtagtggagacagcttttatttgtactggaaatctggaatttgattgatggttcaactta

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