LOCUS       XM_015772170            1989 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase
            MARCH2 (LOC4324432), transcript variant X2, mRNA.
ACCESSION   XM_015772170
VERSION     XM_015772170.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029256.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015772170.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="1"
     gene            1..1989
                     /gene="LOC4324432"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 7 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4324432"
     CDS             297..767
                     /gene="LOC4324432"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCH2 isoform X2"
                     /protein_id="XP_015627656.1"
                     /db_xref="GeneID:4324432"
                     /translation="

MRRDAAAVPTAAVASPPISVEAVVIDVEGDPAVPAGAACRICHLVPEGGVGPGSEVIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTTTQRVSALFLVSTYTRYMLLPSIPPDYSSYVMSSLRC"

     misc_feature    411..569
                     /gene="LOC4324432"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:450175"
     misc_feature    order(411..413,420..422,483..485,498..500,507..509,
                     516..518,555..557,564..566)
                     /gene="LOC4324432"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
ORIGIN      

tacgcaccaaatcacaatcacctcaccgactcaccgcgtcgtctcgtctacacaggtctcggacggctaagctaccggcccccgcccggtcgcctcccggtttggcgcttcccgcgcccgtaccccgtaggccgtagcgaggcgaagccggccagccaagccaaccccgtcccgcactcaagcacgcgcgcgccgcctcttataccgccttcccgcctcctacccagtatatccccccgtgagggcccttgatacggccgagaccgaccgggccccgatcgttcgacccggagcatatgcggcgagacgcggccgccgttccgacggcggccgtcgcctcgccgccgatctcggtggaggcggtggtcatcgacgtcgagggggatccggcggtccccgccggcgctgcgtgccggatctgccacctcgtcccggagggcggcgtcgggcccgggtcggaggtgatccggatcgggtgcggctgcaaggacgagctcggcgccgcgcaccgccactgcgccgaggcctggttcaggatcaagggcgataggcgctgtgagatttgtggttcagatgccaaaaacattattgggctggaagtgaaaaaattcatggaagaatggcatggtccaagactggcaaacacacgaactacaacgcagagggtttccgccctgtttcttgtctctacatacaccaggtacatgcttttaccctcaataccgcctgattattcgtcttatgtcatgagttcgttacgatgttgaactagcaatttatgttaaataaagaagaaaaaaatggctaaataccaatcataattaattaggatacacaaagtattgttaaatccattcaagagaagagataaaaccttgtaaaatatgcatcgtttacatatgtaaccctatataactgatgtattttgtacgtagtgaacaatgagtagcaaagactcaaacatttacttggacagttggtgccaattgtttgtaccttgcatttgcaatctgagatatgatttcctagaattcaattgtatattgtttaacattttttaaaaaagaaatgaaactgaataagttatgcaactttttaaagtacaaacataagagattttgataacttgaaactaatgattcctctaactaagattccacaacatagaataagaaccatatactagtagggcctgcccagagaagtgccctgtgctctgacctactgaatcatgtgcctaatatatatattttttctcgatgtcccatatgatgtatgttttgcctctcctttttttttatttattttacagtttttgcagtgttgagctgagtcctggtcctaactggaattaactcaattaagcatttcatttacatcagtactactaatacagatttgctttttcaaaagaacagcgtatatctctattggttcgacttcaacggataagaatttcgttgattcgtattctgtggagatcactttaatcctggaagctcgatttccatatccaatggtggttggatggtatgagagcaatcaactaccatttgtttttgtagtacagtttcatgtcgccgtaacacctgcaatcagagaaaagcaagatagactgtacaactgatcagctactctgcctactcagctggccacaaaatgatggatgttttgcgttgctcttattgacgcgtgtagtttccgaaattttctggttagtgtagtctagctggcatgctctacctattacgccatgcttgttaattttttttttagaaaatgagataaacccagcctttgcatccaatcggcccaaacgccatgcttgttaatggtcttggaaagagtttttcgttgtgtcagtagtctgtacgaggaaatattgtaggcatctcatgttttacattctctactcgtacatcaaatgctttactacatgtcatactgattgtaatttttcatttaattgaggtcttgtgttcaactttc

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