LOCUS       XM_015769369            2699 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox protein ATH1
            (LOC4328784), transcript variant X2, mRNA.
ACCESSION   XM_015769369
VERSION     XM_015769369.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029257.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015769369.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="2"
     gene            1..2699
                     /gene="LOC4328784"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 9 ESTs, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4328784"
     CDS             661..2280
                     /gene="LOC4328784"
                     /codon_start=1
                     /product="homeobox protein ATH1 isoform X2"
                     /protein_id="XP_015624855.1"
                     /db_xref="GeneID:4328784"
                     /translation="

MSGNPSFSQLGAVDAAMNGGYFMAASGNGADVPLFHPAMAPPHDHGGSFGYGDAAAAAMDVGAHFAAANNLVLASLATQLFGAAPAAAAHGHGDYLGATTPPEEEMGGGYDVAVGDSSGGAVSLACLGHGQPGDMAAGWCSTSARKPSCNWSSSNAGVHGGSYYLAGVPEAAGFVSAAAAASELSLSLCSKSSSDSMLNAGGDQCSSAASRSGLTQMSRVVVVEPEPPLVPYYPAANFAVVVARSRYAAVAQQVLNDAVGCVLGGVADAAADSASGVDSGSSRPSSCSVAGGAPSSAVSSNNQLIASSGEHTHGGGDASAQRLRSELLTMLQLMDQKYNQCLDEIQSTTARFNTLTHATARAAGMSSSSICAPFAHRAVSAMYHGLRRRIAGEIMSAAAAAGRPCRGGESSSAVTGGERERSWESAFIQKHWAVQQLRRGEQQCWRPQRGLPEKSVAVLKAWMFENFLRPYPKDSEKEMLAARSGLSRNQVSNWFINARVRLWKPMIEEMCEELKRSSGGGAGNQALAMEHMNSQDVVS"

     misc_feature    1381..1833
                     /gene="LOC4328784"
                     /note="Associated with HOX; Region: POX; pfam07526"
                     /db_xref="CDD:429514"
     misc_feature    order(1993..2007,2011..2013,2071..2073,2089..2091,
                     2128..2130,2134..2139,2146..2151,2155..2163,2167..2172)
                     /gene="LOC4328784"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1999..2001,2008..2010,2137..2139,2146..2151,
                     2158..2160)
                     /gene="LOC4328784"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    2047..2163
                     /gene="LOC4328784"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

gatgaaaaccggtgaaatccaaactttcttgaccaggtcagaaagctacaaactactcggtcttttggtcaagtttaaaattttcaaactaaatttaaatttttgtcaagatttatctatattttatcggtttataaatggttttaatcggatagtgaatcactcggcatctataatactcctacagtagtataatgagtgagctactactagttgtgtatgggcaccaacaccttgtcattggcactttgcctcctgagtagggcccattggttctttgatagcctctcctccaaggccaaaaaattttctgacccagtgtcaaggtcagggagagctgctcccttgctggccttgagatgtttgcattggttttttccctttccctttctctttggtggtcattaggcctacctgatactacttgtagtgagtgagtgataagttgataacacttctccctgccccaattgtttccttgttcctagtagaagtagaagctggaagctggtctctttgggttttggaaggcttcatctttccattttaggtcctgcaagtgtgctcaacaactcaagcttcactgtcttcttggtttctacctctggttttgattattatcactagtttctgcaattcttggagatttccgaggcggccatgagcggcaatccatcgttctcgcagctcggtgcggtggacgccgccatgaacggcggctacttcatggcggcgagcggcaatggcgccgacgtgccgctgttccatccggccatggcgccgccgcatgatcacggcgggagcttcggctacggcgacgcggcggcggcggcgatggacgtcggcgcgcacttcgcggcggcgaacaacctcgtgctcgcgtccctggcgacccagctgttcggcgccgcgccggcggcggcggcgcacgggcatggcgactacctcggcgcgacgacgccgccggaggaggagatggggggcgggtacgacgtcgccgtcggcgacagctccggcggcgcggtgagcctcgcgtgcctcggccacggccagccgggcgacatggcggcggggtggtgctcgacgtcggcgaggaagccgagctgcaactggagcagcagcaacgccggtgtgcacggtggttcgtattacctcgccggggtgccggaggctgccggcttcgtgtccgcggcggcggcggcgagcgagctgtcgctgagcctgtgctccaagtcgtcctcggacagcatgctcaacgccggcggcgaccagtgctcgtcggcggcgagccgttccgggctgacgcagatgagcagggtggtggtggtggagcccgagccgccgctcgtaccgtactacccggcggcgaacttcgccgtggtggtggcgcggtcccgatacgccgcggtggcgcagcaggtgctcaacgacgccgtcggctgcgtgctgggcggcgtcgcggacgccgccgccgactcggccagcggcgtcgacagcggcagctcgaggccgtcgagctgctcggtggccggcggcgcgccgtcgtccgccgtgagctccaacaaccagctcatcgcctcctccggcgagcacacgcacggcggcggcgacgcttcggctcagcggctcaggagcgagctcctcaccatgctccagctgatggatcagaagtacaaccaatgcctcgacgagatccagagcacgacggcgaggttcaacaccctgacgcacgccacggcgcgcgccgccgggatgagcagcagcagcatctgcgcgccgttcgcgcaccgcgccgtgtcggcaatgtaccacggcctgaggcgccgcattgccggcgagatcatgtccgccgccgccgcggccggcaggccttgccgcggcggcgagtcgtcgtcggcggtgaccggcggcgagagggagcggagctgggagtcggcgttcatccagaagcactgggcggtgcagcagctgcggcgcggcgagcagcagtgctggcggccgcagcgcggcctcccggagaagtccgtcgccgtcctcaaggcctggatgttcgagaacttcctccgcccgtatccgaaagacagcgagaaggagatgctcgcagcaaggagcggcctcagcaggaaccaggtgtcgaattggttcataaacgctcgagttcggctatggaagccaatgatcgaggagatgtgcgaggagctgaagaggagctcgggtggtggtgctggaaatcaagctctagcaatggagcatatgaacagccaagatgtggtcagttaaccagttagagctttggcttggtttgatggcgatgttagctgcggattaagatcaatcaatgccattgatctatttatcgatcaccaattgtaactcagtttaattcgatggtttcagtatatataaaagctgccggtgcagtgatcgcatttcgcggtagatcatgagcacctcattgggagatcgatgcgaattgctgagttttcagttgagtaggctgcagtaaaaaaatcagttaaaaaatttgggattgattgttgttagtactacctcagttccaaattataaggatatttaggctatttagtaaatagttctgaggttggcaatttttttttttgaattgcgtacgtcttaggggctcaagatccgctcatattttcacattgttgatgtcctaagatccgctcatattttca

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