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2024-03-29 20:55:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015767449            1094 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group probable complex I
            intermediate-associated protein 30 (LOC4324734), transcript variant
            X2, mRNA.
ACCESSION   XM_015767449
VERSION     XM_015767449.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029256.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015767449.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="1"
     gene            1..1094
                     /gene="LOC4324734"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, 11 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 59 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4324734"
     CDS             95..784
                     /gene="LOC4324734"
                     /codon_start=1
                     /product="probable complex I intermediate-associated
                     protein 30"
                     /protein_id="XP_015622935.1"
                     /db_xref="GeneID:4324734"
                     /translation="
MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTIAMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKIPLDSYLPTWRGNVIEAKMEMNPARVVGMSLSVNAEGGVPGAKTGPGDFRLEVDWIKALRTL"
     misc_feature    197..754
                     /gene="LOC4324734"
                     /note="Complex I intermediate-associated protein 30
                     (CIA30); Region: CIA30; pfam08547"
                     /db_xref="CDD:430066"
ORIGIN      
gcgccgtcgtggtcgccgtcgttcgtcctgctgcttccgccgcatcccggtgagcatccatcaatccgccactgctgaacggggtgctttcgccatgtcgaggctgcgggcgctgtggcaagcctccgttaacgccaccaggcgagccattgtgtggaattcagaagacctaatcccaccaagtgaaaagtacatcttcaattttaattcaaaagatgagctgaaaaggtggcacttgtattcagattccgagtatggaggtttatcatctgcatcattggagataactgatggtggtgctggtggggatacttcatcaactggtctcttttctggcaatctctctttggatatgtctgagggatcaacatggaagataaggcgtagtggtttctgtggaatgagatcaaagaagtttaatggtttcattgatcttgatgcatatgatactatagcgatgaaactcagaggggatggaagatgctacatatctactatatacacagagaactgggtgaattcacctggacaacaggaagataattcgtggcaagcctttgtgtacttaccccaggacagatggcaaatcatgaagatccctcttgattcgtatctacccacatggagaggaaatgtgatcgaagcaaagatggaaatgaaccctgctcgtgttgtgggaatgtctctatccgtaaatgctgagggcggtgtacctggtgcaaagactggaccaggtgattttaggctagaggttgattggatcaaggcattgaggacactctgaatttgtggtttccacaaatcggtctttttgtaggatttctcagggctggaaatttcttaccggcactttttcatgtgataattgctgaatatcacgaggcatggagatgcgtcatgcagtttgtattactcctagtcaatacaatgggacatcgaaaggaggcaactgttcagcgcagatgaataatgaggtctcttttgcttttgggggaaatgaatatacaaatgtatcacctgtttcttatggctgtctgaacatacgttacttccttgctactgtgtccgatgaatttttatccattccgcatcaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]