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2024-03-29 20:42:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015765258            1924 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266982
            (LOC9266982), mRNA.
ACCESSION   XM_015765258
VERSION     XM_015765258.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029267.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015765258.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="12"
     gene            1..1924
                     /gene="LOC9266982"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 36 ESTs, 15 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 98 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9266982"
     CDS             161..1627
                     /gene="LOC9266982"
                     /codon_start=1
                     /product="uncharacterized protein LOC9266982"
                     /protein_id="XP_015620744.1"
                     /db_xref="GeneID:9266982"
                     /translation="
MEGPKRSQLRVRLRVTARRRGGDGGADGGGSGGGGGGAGGRKRLLDAPAFNSAAKLQRREIGGRQLAARGGGAASAVPERFRNMHLQEEFDTYDHNAHLFVKLQFLKKRSKIIEIVAAKDIIFALAHSGLCAAFSRVTNKRISFLNLSPDEVIRSLFYNKNNDSLITVSVYASDHFSTLKCRTTPIEYIRRNQLDAGFPLFETESLKWPGFVEFDDVNGKVLTYSAQDGIYKVFDLKNYSFLYSIPDTNVQEIKISPGIMLLIYERTPCHVPLKILSIEDGRPLKSFTHLLHRNKKIDFIEQFNEKLLVKQEDENLQILDVRSSELIEVSVTKFMTPSAFIFLYENNLFLTFRNRTVAVWNFRGELVTSFEDHLLWHQDCSTNNIYITSDQDLIISYCKSEAGVDDGTVPPIGSINMSDIMTGKCIAKIAANDPTLRIGPRKNGNSERSSIWSTIPEALEDVTALFYDEDRNEIYTGNRHGLVHVWSN"
     misc_feature    794..1621
                     /gene="LOC9266982"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; Region:
                     WD40; cl29593"
                     /db_xref="CDD:453027"
     misc_feature    order(827..829,842..844,860..865,896..898,953..955,
                     986..991,1025..1027,1034..1036,1085..1087,1097..1099,
                     1115..1120,1157..1159,1211..1213,1220..1222,1238..1243,
                     1274..1279,1346..1348,1376..1378,1412..1417,1457..1459,
                     1475..1480,1529..1534,1586..1588,1598..1600,1616..1621)
                     /gene="LOC9266982"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
ORIGIN      
cctcttctccttccttccccccctcgactccccaccaccaaattccccctcaaaccctagctagctccacctcctcctcctccttcgaaaccctagcctcaccaccccccgccacgagggaggagcgagcggcgcagtggtggacggcggcggcggcgggatggaggggcccaagaggtcgcagctgagggtgcggctccgcgtgacggcgcggcggaggggcggcgacggcggcgcggacggcggagggagcgggggcggaggcggcggggccgggggcaggaagcggctgctggacgcgccggccttcaactcggccgcgaagctgcagcggcgcgagatcgggggcaggcagctcgccgcgcgcggcgggggcgccgcgtccgccgtgcccgagcggttccggaacatgcatctccaggaagagttcgatacgtatgatcacaatgcccacctatttgtgaagctgcagtttcttaaaaagagatccaaaataattgagattgttgcagcaaaagatatcatatttgctcttgcgcactctgggttgtgtgctgcttttagtcgagttacaaataagcgcatatccttcctgaatttaagcccagatgaagtcatccggagcttgttctacaacaagaacaatgattcacttattactgtgtctgtttatgcgtcagaccattttagcacattgaagtgcagaacaaccccaatcgagtatataaggaggaatcagttagatgctgggtttcctctttttgaaacagaatctctgaagtggcctggctttgtggagtttgatgatgtgaatggaaaagtactcacctactcagctcaggatggtatctataaggtcttcgatttgaagaattactcttttctatattcaatacctgacaccaatgtgcaggagataaaaataagtccaggaatcatgctcttgatatatgaaagaacaccatgtcatgttcctttgaagatattgtcaattgaagatggaagaccactaaaatccttcacgcatttgttgcaccgtaataagaaaattgattttatcgagcaattcaatgaaaagctccttgtcaagcaagaagatgagaaccttcagatacttgatgtacggagttctgagctaattgaagtcagtgttaccaagtttatgactccatcagcattcatttttctgtacgagaacaatctcttcttgacattccgaaacaggacggttgctgtatggaattttcgaggagagctcgtgacctcatttgaagaccatttgctttggcatcaagattgtagcaccaacaatatctacattaccagtgatcaggatctgattatctcatactgcaaatctgaggcaggggttgatgatggtacagtacctccaattgggtctatcaacatgagtgacattatgactggcaaatgcatcgccaagattgctgctaatgatcccaccctccgtattggccctcgcaagaatggtaactctgagaggtcctcaatttggagcaccattccagaagctcttgaagatgtcacagcgcttttttatgacgaggacaggaatgagatctatactggcaacaggcatgggctggtgcatgtgtggtccaactaggttgtaatatgtatatgtacatacgcccttttcgatttgaccagaagattggattagccattgtgcaccatcatcccctgcctggtgatcaccttagtttttgtatttttggtcttttggcaaagaatgttattcccttgtcagtcaagagaaaaatgtagttaccctgtatatatcttttgtaatgccctgtcatataccatgttcttggcagctggcctctctgtcccaaccacgaaacatctggcaggaaccatctaactaattaagcttctcattcctttcggtgtttattct
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]