2024-03-29 20:42:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015765258 1924 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266982 (LOC9266982), mRNA. ACCESSION XM_015765258 VERSION XM_015765258.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029267.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015765258.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1924 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="12" gene 1..1924 /gene="LOC9266982" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 36 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns" /db_xref="GeneID:9266982" CDS 161..1627 /gene="LOC9266982" /codon_start=1 /product="uncharacterized protein LOC9266982" /protein_id="XP_015620744.1" /db_xref="GeneID:9266982" /translation="
MEGPKRSQLRVRLRVTARRRGGDGGADGGGSGGGGGGAGGRKRLLDAPAFNSAAKLQRREIGGRQLAARGGGAASAVPERFRNMHLQEEFDTYDHNAHLFVKLQFLKKRSKIIEIVAAKDIIFALAHSGLCAAFSRVTNKRISFLNLSPDEVIRSLFYNKNNDSLITVSVYASDHFSTLKCRTTPIEYIRRNQLDAGFPLFETESLKWPGFVEFDDVNGKVLTYSAQDGIYKVFDLKNYSFLYSIPDTNVQEIKISPGIMLLIYERTPCHVPLKILSIEDGRPLKSFTHLLHRNKKIDFIEQFNEKLLVKQEDENLQILDVRSSELIEVSVTKFMTPSAFIFLYENNLFLTFRNRTVAVWNFRGELVTSFEDHLLWHQDCSTNNIYITSDQDLIISYCKSEAGVDDGTVPPIGSINMSDIMTGKCIAKIAANDPTLRIGPRKNGNSERSSIWSTIPEALEDVTALFYDEDRNEIYTGNRHGLVHVWSN"
misc_feature 794..1621 /gene="LOC9266982" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:453027" misc_feature order(827..829,842..844,860..865,896..898,953..955, 986..991,1025..1027,1034..1036,1085..1087,1097..1099, 1115..1120,1157..1159,1211..1213,1220..1222,1238..1243, 1274..1279,1346..1348,1376..1378,1412..1417,1457..1459, 1475..1480,1529..1534,1586..1588,1598..1600,1616..1621) /gene="LOC9266982" /note="structural tetrad [active]" /db_xref="CDD:238121" ORIGIN
cctcttctccttccttccccccctcgactccccaccaccaaattccccctcaaaccctagctagctccacctcctcctcctccttcgaaaccctagcctcaccaccccccgccacgagggaggagcgagcggcgcagtggtggacggcggcggcggcgggatggaggggcccaagaggtcgcagctgagggtgcggctccgcgtgacggcgcggcggaggggcggcgacggcggcgcggacggcggagggagcgggggcggaggcggcggggccgggggcaggaagcggctgctggacgcgccggccttcaactcggccgcgaagctgcagcggcgcgagatcgggggcaggcagctcgccgcgcgcggcgggggcgccgcgtccgccgtgcccgagcggttccggaacatgcatctccaggaagagttcgatacgtatgatcacaatgcccacctatttgtgaagctgcagtttcttaaaaagagatccaaaataattgagattgttgcagcaaaagatatcatatttgctcttgcgcactctgggttgtgtgctgcttttagtcgagttacaaataagcgcatatccttcctgaatttaagcccagatgaagtcatccggagcttgttctacaacaagaacaatgattcacttattactgtgtctgtttatgcgtcagaccattttagcacattgaagtgcagaacaaccccaatcgagtatataaggaggaatcagttagatgctgggtttcctctttttgaaacagaatctctgaagtggcctggctttgtggagtttgatgatgtgaatggaaaagtactcacctactcagctcaggatggtatctataaggtcttcgatttgaagaattactcttttctatattcaatacctgacaccaatgtgcaggagataaaaataagtccaggaatcatgctcttgatatatgaaagaacaccatgtcatgttcctttgaagatattgtcaattgaagatggaagaccactaaaatccttcacgcatttgttgcaccgtaataagaaaattgattttatcgagcaattcaatgaaaagctccttgtcaagcaagaagatgagaaccttcagatacttgatgtacggagttctgagctaattgaagtcagtgttaccaagtttatgactccatcagcattcatttttctgtacgagaacaatctcttcttgacattccgaaacaggacggttgctgtatggaattttcgaggagagctcgtgacctcatttgaagaccatttgctttggcatcaagattgtagcaccaacaatatctacattaccagtgatcaggatctgattatctcatactgcaaatctgaggcaggggttgatgatggtacagtacctccaattgggtctatcaacatgagtgacattatgactggcaaatgcatcgccaagattgctgctaatgatcccaccctccgtattggccctcgcaagaatggtaactctgagaggtcctcaatttggagcaccattccagaagctcttgaagatgtcacagcgcttttttatgacgaggacaggaatgagatctatactggcaacaggcatgggctggtgcatgtgtggtccaactaggttgtaatatgtatatgtacatacgcccttttcgatttgaccagaagattggattagccattgtgcaccatcatcccctgcctggtgatcaccttagtttttgtatttttggtcttttggcaaagaatgttattcccttgtcagtcaagagaaaaatgtagttaccctgtatatatcttttgtaatgccctgtcatataccatgttcttggcagctggcctctctgtcccaaccacgaaacatctggcaggaaccatctaactaattaagcttctcattcctttcggtgtttattct
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]