LOCUS       XM_015764786            1778 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group auxin-binding protein 4
            (LOC4352396), mRNA.
ACCESSION   XM_015764786
VERSION     XM_015764786.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029267.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015764786.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="12"
     gene            1..1778
                     /gene="LOC4352396"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 mRNAs, 15 ESTs, 13 Proteins, and
                     83% coverage of the annotated genomic feature by RNAseq
                     alignments, including 98 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4352396"
     CDS             894..1514
                     /gene="LOC4352396"
                     /codon_start=1
                     /product="auxin-binding protein 4"
                     /protein_id="XP_015620272.1"
                     /db_xref="GeneID:4352396"
                     /translation="

METRTGPTAAGGHGAHLAGAGRGALLLALVVVSAAAFLPVAESSCPRDNSLVKDVSKMYQSNYGREGFSHITIAGALAHGMKEVEVWLQTFGPGQRTPIHRHSCEEVFVVLKGKGTLLLGSSSMKYPGQPQEIPVFQNSTFSVPVNDPHQVWNSDEHEDLQVLVIISRPPVKIFTYDDWSVPHTAAKLKFPYFWDEDCLPAPKDEL"

     misc_feature    1041..1493
                     /gene="LOC4352396"
                     /note="auxin-binding protein 1, cupin domain; Region:
                     cupin_ABP1; cd02220"
                     /db_xref="CDD:380349"
     misc_feature    order(1044..1058,1110..1112,1134..1145,1149..1151,
                     1206..1208,1212..1214,1218..1220,1242..1244,1248..1250,
                     1290..1292,1296..1301,1305..1319,1380..1382,1386..1388,
                     1392..1397)
                     /gene="LOC4352396"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:380349"
     misc_feature    order(1095..1097,1152..1154,1158..1160,1182..1187,
                     1191..1193,1197..1199,1209..1211,1215..1217,1338..1340,
                     1473..1475)
                     /gene="LOC4352396"
                     /note="active site"
                     /db_xref="CDD:380349"
ORIGIN      

caggtttggaattctgatgagcatgaggatttgcaggttattgtggtcatatcgcgcccgcctatcaaagtgtgagtattcattgcttgaaaaaatttgttacaatcatgaatctttatagaattgtatcagttgtgtaattttttttttgtcagaactcagaatcgatcttcagaaggttgttagacatgctatatgtatacttctgtacctgattacacctgtaaatcttgaacatttttatgaagggtaataatgtttctgaacgttgatggcatttcttgtaggtttttctacgatgactggaatatgcctcacacggctgcaaaactgcagttccccatcttctgggacgaggaatgcttaattgcacctaaagatgaactctaggctataaactgcatattgttgttgtcatctttgttcaaggtgcaggctgtaattgcaatttcttgcccaatgttcagaatatgtacctgatagcttctgaaataagggacactacttcacaatgtttccatgataacaatgcttttatcgaatcattgattaaaaataatttctcaatttttcatcctaaacatctgatctgagcttagtagctttacagtttaacatggttgaaaatgtaacagaaacattcaggtagcaacaggcacactgattcagtagaaaaatagcacacacaaaaaaaaaactactgaagacactagcaaagtagcaagagaaagctactattcttttattttactttttaaggggaaaagttcacatctctctgcgtgtgggcccatgattgtgtggggcccattggtcatcgatttattttggagtaaggggaaagttaatttctactgcatttctcagttttcgagaggtctagaagaaaagagatggagactagaactggaccaactgccgccggcggccatggcgcccacctcgccggcgccggccgcggcgccctcctcctcgcgctcgtcgtcgtctctgccgccgccttcctccccgtagccgaatcgtcctgcccgcgagacaattcgcttgtgaaagatgttagcaaaatgtaccaaagcaactatggaagggaagggttctcacatataaccattgctggtgccctagctcatggaatgaaggaggtggaagtgtggcttcagacatttggaccagggcaaaggacgccgatccacaggcactcgtgcgaggaagtttttgtcgtcttgaaagggaaagggacactcttgctggggtcaagctcaatgaagtatccagggcagcctcaggagattcccgtctttcagaatagcacattctctgttcctgtaaatgatccgcaccaggtttggaattctgatgaacatgaggatttgcaggtgcttgtgatcatttcgcgcccacctgtcaagatatttacatatgacgattggagtgtgcctcatacagcagcaaaactgaagttcccctacttctgggatgaggactgcttaccagcaccgaaggatgaactctagtttctaaaccggctattgcagtgtatcatcttcattcaagatactgctggattgcggtcgatacttgctgtaactcttttcccttctctctaatgtgcagttctaaaatgtgttctcttgcttaatgtcaggacttatgtacttagagcttttgcagtaaggaccactgtaagtgtaaactagttacataataacgcttcactaatccagacattatctgtgtatataaataaatgcctacacagctggtttcttgttgattaa

//