LOCUS       XM_015755218            1705 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HOX25 (LOC9266289), mRNA.
ACCESSION   XM_015755218
VERSION     XM_015755218.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029264.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015755218.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="9"
     gene            1..1705
                     /gene="LOC9266289"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 8 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 67 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9266289"
     CDS             468..1469
                     /gene="LOC9266289"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX25"
                     /protein_id="XP_015610704.1"
                     /db_xref="GeneID:9266289"
                     /translation="

MCSMDDYSGRLVFSSAGAAPPCSAAGAGGGQMLLFGGHGGFVGGSPVMEEAELRRRRRKRPFLTTTHDELELQMEDLVDELYGVDEQGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQANGKSPSPSPAPAEQTAVPAAPESAKSFQLEEGRRLYDAAGSTTTTNGGGGGVAMPAARVAAARAASNDSPESYFAGARSPPSSSEDDCGGAGSDDDYPSSSVLLPVDATLVGDAFEHAVAATVAADEEAPLNSWEWFWN"

     misc_feature    order(750..758,762..764,816..818,834..836,873..875,
                     879..884,891..896,900..908,912..917)
                     /gene="LOC9266289"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    750..914
                     /gene="LOC9266289"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(753..755,759..761,882..884,891..896,903..905)
                     /gene="LOC9266289"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    918..1043
                     /gene="LOC9266289"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
ORIGIN      

tcaagactttacccacaaaagcctccctcccctcacaaagtccaatttcctccactggccagcaactaataaccaaccaggcccctgaaaaaacatatttcttacagttcagtccctccgccgccgctggctcgcttctccggccaccgcgcaccgatcaaccttggcctgaccaacctccccaccggcggcggcggcggcggcatggggttctctctgcaccccatgaagatgtccacgcgcttgctgtggagcaccagcttcttccgccacaagttcccggccgccgccgccgccgccgccatcgccgccgctttctagctcagctccggctcgccggccggtgcccgtctgcctccgtgtttcgagaggaggcggacgagcttatagctaatatacgtagagagattatatatatatatatatatttacagtttgacaacgaggtggagtagagaggtgtgtacatgtgcagcatggacgactactccggccgcctcgtgttcagctccgccggcgccgcgccgccgtgcagcgccgccggcgcgggaggcgggcagatgctgctctttggcggccatggcggcttcgtcggaggctcaccggtgatggaggaggccgagctgcggcggcggcggcggaagaggccgttcctgacgacgacgcacgacgagctggagctccagatggaggacctcgtcgacgagctgtacggcgtcgacgagcaggggtcgtcgtcagcggcggcgaggaagcggcggctgacagcggagcaggtgcgagcgctggagcggagcttcgaggaggagaagcggaagctggagccggagcggaagagcgagctggcgcggcgtctcgggatcgcgccgcggcaggtggccgtgtggttccagaaccgccgcgcgaggtggaagacgaagcagctcgagctcgacttcgaccgcctccgggccgcccacgacgagctcctcgccggccgcaccgcgctcgccgccgacaacgagagcctccgatctcaggtgatcctattaaccgagaagctgcaagctaatgggaagtcaccgtcaccgtcgccggcgccggcggagcaaaccgccgtgccagccgcacctgaaagcgccaagtcgtttcagctcgaagaaggtcgccgcctctacgacgccgccgggagcaccaccaccaccaacggcggcggcggcggcgtcgcgatgccggcggcgcgcgtggcggcggcaagagcggccagcaacgacagccccgagtcctacttcgccggcgctcgctcgccgccctcgtcgtcggaggacgactgcggcggcgccggcagcgacgacgactacccctcttcctccgtcttactcccggtcgacgctacgctcgtcggcgacgccttcgagcacgccgtggcggcgacggtggcggcggatgaggaggcgccgctaaacagctgggagtggttctggaattgatcgagtgatatctctggctgggattttctatgtttatattccttttttattccttttttatattccttttatattccttttttatgcttggttactagcaatatgatgctaatgtataaattaagcagattaaaaattataaggacggacttttttttacgatttttagggtgtaatcgaatgcaatatggaaggaagatcacaatgtttatggacatgtttttgccttggaataa

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