LOCUS       NM_001428163            1179 bp    mRNA    linear   PLN 15-FEB-2024
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 9-like
            (LOC4324824), mRNA.
ACCESSION   NM_001428163 XM_015787499
VERSION     NM_001428163.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK102203.1 and AP014957.1.
            
            On Feb 15, 2024 this sequence version replaced XM_015787499.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK102203.1, CI212678.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020313
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               AK102203.1         2-171
            171-173             AP014957.1         36814851-36814853   c
            174-1179            AK102203.1         175-1180
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1179
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /note="WUSCHEL-related homeobox 9-like"
                     /db_xref="GeneID:4324824"
     exon            1..611
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    212..214
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /note="upstream in-frame stop codon"
     CDS             233..835
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /note="putative homeodomain transcription factor;
                     P0529E05.42; LOC_Os01g63510; Protein WOX5;
                     Quiescent-specific homeobox protein"
                     /codon_start=1
                     /product="WUSCHEL-related homeobox 9"
                     /protein_id="NP_001415092.1"
                     /db_xref="GeneID:4324824"
                     /translation="

MEALSGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHHHKKRRRGASSPDSGSNDDDGRAAAHEGDADLVLQPPESKREARSYGHHHRLMTCYVRDVVETEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCREISFFDVAAGRDPPLELRLCSFGL"

     misc_feature    440..586
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8W0F1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            612..1179
                     /gene="LOC4324824"
                     /gene_synonym="B1096A10.8; OsJ_004011; OsWOX9; QHB; WOX5;
                     WOX9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcattgcttctgatcagaagaagatcccggaagagaccaaatcagaagctaaacctatctaccacaaggccaagttacgttagaccgttttgatcagtgaattagctttcaagcagttctactgctcccagccgctcgatcgatcgatcgatcaaacaaggtagctagctagctcaggatcaaatctggtttgtctacatatataggtagtgatcgatcagtcggtcggtcatggaggctcttagcgggcgagtgggggtgaagtgtgggcggtggaacccgacggcggagcaggtgaaggtcctgacggagctgttccgagcggggttgcggacgccgagcacggagcagatccagcgcatctccactcacctcagcgcattcggcaaggtggagagcaagaacgtcttctactggttccagaaccacaaggcccgcgagcgccaccaccacaagaagcgccgccgcggcgcctcctcccccgacagcggcagcaacgatgacgatggccgcgccgcagcccacgagggcgacgccgacctcgtcctgcagcctcctgagagcaagcgggaggccagaagctacggccatcatcaccggctcatgacatgctacgtgagggatgtggtggagacggaagcgatgtgggagcggccgacgagggaggtggaaacgctggagctgttcccactcaagtcgtatgacctcgaggtggacaaggtccggtatgtgaggggcggcggtggcgagcagtgcagggagatctcgttcttcgacgtcgctgccggccgggatccgccgctggagctcaggctttgcagcttcggcctctagatcgacccgtgcattgatgtgccgcacatatggcatgagatgcagcttgccgcgactgtacctggcctcttgtcgctgtgcctagtcctagttctagctgccccacatcaaaaggagtacgtacgagatgtcatgagatacggcatgtgttgtgggaaagtccgttgttgcatgcagtatctgggaggatcaggaaagagcacgcaaacgagatttccccattgcccttttccttggtctttccatcatgagatgtacttctacttttcttcttttctgctacatggatactaacatggtcactgctgatacttctatatgatatatccattaattaatattcc

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