LOCUS       NM_001424295            3683 bp    mRNA    linear   PLN 24-SEP-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute PNH1-like
            (LOC9269490), mRNA.
ACCESSION   NM_001424295 XM_015788315
VERSION     NM_001424295.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Nishimura A, Ito M, Kamiya N, Sato Y and Matsuoka M.
  TITLE     OsPNH1 regulates leaf development and maintenance of the shoot
            apical meristem in rice
  JOURNAL   Plant J 30 (2), 189-201 (2002)
   PUBMED   12000455
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014962.1, AB081950.1, CB641980.1, CB664042.1, CB641981.1 and
            AU091754.1.
            
            On Sep 16, 2023 this sequence version replaced XM_015788315.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020311 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-337               AP014962.1         23540164-23540500
            338-451             AB081950.1         61-174
            452-1715            AB081950.1         272-1535
            1716-1749           CB641980.1         812-845
            1750-1932           AB081950.1         1570-1752
            1933-2080           CB664042.1         274-421
            2081-2949           AB081950.1         1898-2766
            2950-3099           CB641981.1         575-724             c
            3100-3512           AB081950.1         2917-3329
            3513-3683           AU091754.1         544-714
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..3683
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /note="protein argonaute PNH1-like"
                     /db_xref="GeneID:9269490"
     exon            1..451
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    369..371
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /note="upstream in-frame stop codon"
     exon            452..974
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     CDS             504..3443
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /note="ZLL/PNH homologous protein; P0417D05.31;
                     LOC_Os06g39640; Protein PINHEAD homolog 1"
                     /codon_start=1
                     /product="protein argonaute PNH1"
                     /protein_id="NP_001411224.1"
                     /db_xref="GeneID:9269490"
                     /translation="

MLEVLDMAPPRHQPAAGKAGGGRGHGHGHGHGGGGGGPAARKQPLQSSMAQPKAETAAATAAVAPPEGGKKCGGGGGRRRGGRGRGGRAGAGPGPGLAAAPAVVVAPAARAVIGPPVASKGLSFCRRPGFGTVGARCVVKANHFLAELPDKDLTQYDVKITPEVSSRSVNRAIMSELVRLYHDSDLGGRLPAYDGRKNLYTAGTLPFDAREFVVRLTDDDDGTGVPPREREYRVAIKFAARADLHHLRQFIAGRQADAPQEALQVLDIVLRELANRRYVSIGRSFYSPDIRKPQRLGDGLQSWCGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVAQILGKDVISRPLSDANRIKIKKALRGVKVEVTHRGNVRRKYRISGLTTQPTHELIFPIDDQMNMKSVVEYFKEMYGFTIQHPHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCRRPREQEMDILQTVQQNGYEQDPYAKEFGINISEKLTSVEARVLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVNHWACINFSRSVQETTARGFCQELAQMCQISGMEFNSEPVIPIYSARPDQVEKALKHVYNMSLNKLKGKELELLLAILPDNNGSLYGDIKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC"

     misc_feature    504..788
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q69VD5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            975..1186
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1333
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1467
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1577
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1684
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1685..1823
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1940
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            1941..2048
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2120
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2121..2243
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2244..2403
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2404..2525
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2526..2663
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2664..2806
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2807..2869
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2870..2933
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            2934..3069
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            3070..3143
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            3144..3238
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            3239..3270
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
     exon            3271..3667
                     /gene="LOC9269490"
                     /gene_synonym="OsPNH1; PHN1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acatgtgatacacttctcaataaaaatccccatccattctcccttccttccatccccttcgataatccacccccatccgttggaaacctcagctgcactaccctctcgtgtttctcgcgccccaattaatccacgggccacaacgttttacctaccgtctccccccacctacaagaaatcatttctacgacgcctgctacctttggtaaaaaaaacggagcatattttgcttcttccctgttcaatcttaccaccggcaggcaaggcgaggtctatttatttatttaccgcgcgaggcggccactactactactaggaccaaacagggtcaaagcagctgcagtagttgcatcagtgacgaagggttctaatgcctttctgtcccgcctcgcattaattctttggcttggttggatgcgagagaaaaaagaggagagattttggtagaattgtgttcgaccagcgggtggcgaggtcggcggcgaggtggtggtggtgcgcacatgctcgaggtgctggacatggcgccgccccggcaccagccggcagctgggaaggcgggcggcgggcgcgggcatgggcatgggcatgggcatggtggtggtggtggtgggccggcggcgaggaagcagccgttgcagagtagcatggcgcagcccaaggcggagacggcggcggcgacggcggcggtcgcgccgccggagggagggaagaagtgcggcggcggtggcgggaggcggcgcggcgggcgcgggcgcggcggcagggcgggtgcggggccggggccggggctggcggcggcgccggccgtggtggtggcgcccgcggcgcgcgccgtcattgggccgccggtggcgagcaaggggctgtcgttctgccggcggccggggttcgggacggtgggcgcccggtgcgtcgtgaaggcgaaccacttcctcgccgagctccccgacaaggatctcacccagtacgacgtgaagatcacgccggaggtgagctcccggagcgtgaaccgggcaatcatgtcggagctggtccgcctctaccacgactccgatctcggaggtcgcctcccggcctacgacggccgcaagaacctctataccgccgggacgctcccgttcgacgcgcgcgagttcgtcgtccgcctcaccgacgacgacgacggcaccggcgtcccgccacgggagagggagtacagggtcgccatcaagttcgccgcgcgcgccgacctccaccacctccggcagttcatcgccgggcgccaggccgacgcgccgcaggaggctctccaggtgctcgacatcgtgctccgtgagcttgccaaccgcaggtatgtctcgatagggcggtcgttctactcgccggacataaggaagccgcagcggctcggcgatggcctacagtcatggtgtgggttctaccagagcatccggccgactcagatggggttgtcgcttaacattgatatgtcatctaccgcgttcatcgagccgctaccagtgatcgaattcgtggcccaaatactagggaaggatgtcatatcgaggccattgtcggatgcaaacagaatcaagatcaagaaagccttgcggggcgtgaaagttgaagtcactcaccggggaaatgtgaggcggaagtatcgcatttcagggctgacaacacaaccaactcatgaactgattttcccaatcgatgaccaaatgaacatgaaatctgtcgtagagtatttcaaggaaatgtatggcttcaccattcagcatccccatcttccctgccttcaggtgggaaaccaaaagaaggcaaactatctaccaatggaggcctgtaagattgttgagggtcagagatatacaaagaggttgaatgaaaagcagatcacatcattactcaaggttacttgccgtaggcctagagaacaggagatggatattctacagacagttcaacaaaatggatatgagcaagacccttatgcaaaagaatttggaatcaacattagtgagaagctaacctcagttgaagctcgggtccttcctgcaccttggctgaaatatcatgatactgggaaggaaaaggagtgcttgccacaagttggtcagtggaacatggtgaacaagaaagtgataaatgggtgcaaggtgaatcattgggcttgtataaatttctcaaggagtgtgcaagaaactactgctcggggattctgccaggagttggcacaaatgtgtcagatatccggcatggaattcaacagtgagcctgtgataccaatatactcagctagaccagatcaagtagagaaggcgcttaagcatgtgtataatatgtcattaaacaagctcaagggaaaagagcttgagcttcttttggccatcctccctgacaacaatggttctttatatggtgatataaaacgtatatgtgaaactgacttggggttgatatcacaatgttgcttaaccaaacatgttttcaagatcagcaagcagtacctggcaaatgtctcacttaaaatcaatgttaagatgggaggaagaaacaccgtgctgctggatgcaataagttggaggattcctttggtcagtgacataccaactattatatttggtgcagatgtcacgcatcctgaaaccggggaggactctagcccatccattgctgctgttgttgcatctcaagactggccagaagttacaaagtatgctggattggtgtgtgctcaggctcatcggcaagagctcattcaagatctttacaagacatggcatgatcctcaaagaggcaccgtaacaggaggcatgatcagggagctcttaatatccttcaggaaggccactgggcaaaagccattgagaataattttctacagggatggtgtcagtgaaggccaattctaccaagttctcctctatgagttggatgctatccgcaaggcatgtgcatctctagaaccaaattatcagcctcctgtaacattcgtggttgtccaaaagcgtcaccatacaagactcttcgcaaacaatcacaaagacagaagtagcacggacaaaagtggaaacattttgcctggaactgttgttgattcaaagatctgccacccatcagagtttgatttctacctctgtagccatgctggaattcagggaacaagtaggccagctcactaccacgtcctttgggatgagaacaatttcactgcagacgaaatgcagacattgacaaacaacctttgctacacttatgcacggtgcacacgctctgtttctgttgttccacctgcatactatgcgcatctggctgcgtttcgagcgcggttctacatggagccagagatgtcggagaaccagacgacgtcgaagagctccactgggacgaacggaacctcggtgaagccattgcctgcggtgaaggagaaggtgaagagggtgatgttctactgttgatgactgggagactacctttaactactcacatatgatgtacctaacattgtagaattttagtggtagggatttagaattagcttccttcaggaaagggagcagagcaagcatttggatcctgagcgacctcttttgaccactctgtaaagtactaagtaacgcatgtataatagttgttgtatcagtctgaaaaaaaggaagtgcactcagtgcttgtttttccaaaaaaaaaaaaaaaaa

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