LOCUS       NM_001423938            1440 bp    mRNA    linear   PLN 21-AUG-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX8-like (LOC4348492), mRNA.
ACCESSION   NM_001423938 XM_015757745
VERSION     NM_001423938.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI768414.1, AK243294.1 and CI201657.1.
            
            On Aug 21, 2023 this sequence version replaced XM_015757745.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK243294.1, CI768414.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-341               CI768414.1         2-342
            342-1296            AK243294.1         343-1297
            1297-1440           CI201657.1         407-550
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="10"
                     /map="10"
     gene            1..1440
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="homeobox-leucine zipper protein HOX8-like"
                     /db_xref="GeneID:4348492"
     exon            1..266
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    98..100
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="upstream in-frame stop codon"
     CDS             203..1120
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="HD-ZIP protein HOX8; Homeodomain transcription
                     factor HOX8; LOC_Os10g23090; OSJNBa0095C06.14"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX8"
                     /protein_id="NP_001410867.1"
                     /db_xref="GeneID:4348492"
                     /translation="

MKRPSCRGSSMAIIHDTSDQQEDNMRSYMDGGGAAAYEEEEEEVEDDDGGGGGGGGGGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRVDGQMSVKLEAVAADEHQPPPPPPPPPLAYNSKVVDGSTDSDSSAVFNEEASPYSGAAIDHHHHQTPASYDTAGFTSFFAPSTTLTSSLSFPSMFHASSHFDGHQELLVGGGGAGAVADADLGGAGFFAGDEHAGGLSWYGAEGW"

     misc_feature    203..412
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(395..403,407..409,458..460,476..478,515..517,
                     521..526,533..538,542..550,554..559)
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    395..556
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(395..397,404..406,524..526,533..538,545..547)
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    560..694
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1);
                     Region: Leucine-zipper"
     misc_feature    560..685
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    719..820
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            267..1440
                     /gene="LOC4348492"
                     /gene_synonym="HOX8; OsHox8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtttgtttctctcttccttccttctctctctctctccattgccagctagctgctcttgtagatccaagctttcttcttcttcctcttgcagctagctagtgttcttcttcttcttcttctcactgttccctagtttcttcctctcagatccattttgtatatcttctctcttcattgttgattctctcaagaattgggctcatgaagaggcccagctgcagaggctcctccatggccatcatccatgacacctctgatcaacaagaggacaacatgaggtcgtacatggacggcggcggcgcggcggcgtacgaggaggaggaggaggaggttgaggacgacgacggcggcggcggcggcggcggcggcggcggcggtggggggctcggggagaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcgcgacttcgccgccctccgctcccgccacgacgccctccgcctcgagtgcgacgccctccgccgcgacaaggacgccctcgccgccgagatcgccgacctccgggacagggtggacggccagatgtccgtcaagctggaggccgtggccgcggacgaacaccagccgcctccgccgccgccgccgccgccactggcgtataacagcaaggtggtggacggctcgacggacagcgactcgagcgcggtgttcaacgaggaggcgtcgccgtactccggcgcggccatcgaccaccaccaccaccaaactccggcgagctacgacacggcggggttcacctccttcttcgcgccatccaccacgctcacctcgtccctctccttcccttccatgttccacgcgtcatcgcatttcgatggccaccaagaactcctcgtcggcggcggcggcgccggcgcagtggccgacgccgacctcggaggcgccggattcttcgccggcgacgagcacgccggcggcctctcctggtacggcgccgagggttggtagaagctagagcttagctagctagcgagagagtgagctcagctaagcttaattagctggcttgattgcttgctttgtggctggttggtgacgccattgttgtaaattacggcattgttaagttgtacatgcatgcatgggggtaattataactaaagtcaatttctatagtttttactactactggctagggcacaagctagcagagacatatacttggaggaaggagacagtgattaatttttttttatggttttcttttacggttttaccctacaactttttgttcctattgacaaaaataaatgtgggccatacttgtc

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