LOCUS       NM_001423108            3625 bp    mRNA    linear   PLN 05-JUL-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC3-like (LOC4349488), transcript variant 2, mRNA.
ACCESSION   NM_001423108
VERSION     NM_001423108.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI622243.1, AB101646.1, CI573775.1 and AK071939.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB101646.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020319 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                CI622243.1         2-62
            62-88               AB101646.1         9-35
            89-200              CI622243.1         89-200
            201-296             CI573775.1         317-412
            297-788             AK071939.1         414-905
            789-3027            AB101646.1         735-2973
            3028-3625           AK071939.1         3145-3742
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="10"
                     /map="10"
     gene            1..3625
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="homeobox-leucine zipper protein ROC3-like"
                     /db_xref="GeneID:4349488"
     exon            1..384
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    163..165
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="upstream in-frame stop codon"
     CDS             199..2847
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="GL2-type homeodomain protein; Protein RICE
                     OUTERMOST CELL-SPECIFIC 3; GLABRA 2-like homeobox protein
                     3; HD-ZIP protein ROC3; Homeodomain transcription factor
                     ROC3; LOC_Os10g42490; OSJNBa0027L23.2"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC3"
                     /protein_id="NP_001410037.1"
                     /db_xref="GeneID:4349488"
                     /translation="

MRRMFGDCQVLSSMAAMAGAASSADALFASPLIPNPALAGFMSSSAAMPFHHFSNAAATLIPKEEGLMGGLHVAKDEGMDLEMDMELSGGSGSAHLDGLLSFADVDDDHKPQHSGHDQPPDAAQPSGAAGGNAKKKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKSDNFRLQAAIRNVVCPNCGHAAVLADMSYEEQQLRIENARLKDELDRLACIATRYGGGGGRQPVLSTSALSCISAPPPVLMPPLDLDMNVYSRHFAEQAPVMGCGDLIPPPVVPQHDGAAAYMGAMMAPVQEQDKQLVVDLAATAADQLARMCRAGEPLWVRQRGAEVMAVEEHARMFSWPVDGAKQGDGGAVARAEGTRDNAVVIMNSINLVDAFLDANKWMELFPSIVCKARTIQIINHGAASGHLGSGTLLLMQAEVQFLSPLVAAREVVFFRYCVHNADEGSWAIVDFPAEGFEEGLLQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKPLQPVFRDYVASGAAFGATRWLSILQRQCERLASELARNIADLGVIRTPEARTNMMKLSQRMITTFCANISASGTQSWTALSDSTQDTIRVTTRKNTEPGQPSGVILTAVSTSWLPFTHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANGSHPRNCISLLRINAASNSSQNVELLLQESSTHPDGGSLVVFATVDVDAIQVTMSGEDPSYIPLLPLGFAIFPATSPSPAAAPTISSSTTTTTGNGNGETSSTPPRNSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALKSSAGGAGGEPASDQ"

     misc_feature    508..630
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="propagated from UniProtKB/Swiss-Prot (Q336P2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(601..615,619..621,670..672,688..690,727..729,
                     733..738,745..750,754..762,766..771)
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    607..768
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(607..609,616..618,736..738,745..750,757..759)
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1228..1938
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1312..1317,1342..1344,1420..1422,1426..1428,
                     1459..1461,1471..1473,1483..1485,1492..1497,1510..1515,
                     1600..1602,1606..1617,1624..1626,1633..1635,1639..1641,
                     1645..1647,1696..1698,1750..1752,1756..1767,1771..1773,
                     1807..1809,1813..1815,1819..1821,1825..1827,1831..1833,
                     1843..1845,1861..1863,1867..1875,1879..1887,1894..1899,
                     1906..1908)
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     misc_feature    2542..2658
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /note="propagated from UniProtKB/Swiss-Prot (Q336P2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            385..650
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            651..768
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            769..957
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1482
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1590
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1806
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1807..1981
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1982..2250
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2251..2346
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2347..3625
                     /gene="LOC4349488"
                     /gene_synonym="GL2-3; OsJ_031281; Roc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aatctctttctcttcttcttctcttctcttcttctcgggagttaggagtgtgtgagtgattgactagggccatgctccttcgtctttgatttttttttctactactgctaggcaggagggcgctggccggatcgccggagaaggaaccactagctagctagctagctactcctattgaagatatcgccggccggacatatgcgcaggatgttcggggactgccaggtcctgtcgtccatggccgccatggccggggccgcctcctccgccgacgcgctcttcgcctcgccgctcatccccaaccccgctctcgccggcttcatgtcctcctccgccgccatgcccttccaccacttctccaacgccgccgccaccttaatacctaaggaggaggggttgatgggcggcctccatgtggccaaggacgaggggatggacctcgagatggacatggagctcagtggcggctccggcagcgcccacctcgacggcctcctcagcttcgccgacgtcgacgacgaccacaagccgcagcacagcggccatgaccagccgcccgacgccgcccagcccagcggcgccgcggggggcaacgccaagaagaagcgctaccaccgccacacggcgcaccagatccagcagatggaggcgctgttcaaggagtgcccgcatccggacgacaagcagcggctgaagctgagccaggaactgggcctcaaacctcgccaggtcaagttctggttccagaatcgccggacccagatgaaggcgcagcaggacagggcggacaacgtgattctgcgcgcggagaacgagaacctcaagagcgacaacttccgcctccaggccgccatccgcaacgtcgtctgccccaactgcggccacgccgccgtcctcgccgacatgtcctacgaggagcagcagctccgcatcgagaacgccaggctcaaagacgagcttgaccgcttggcctgcatcgccacccgctacggcggcggcggcggacggcagccggtgctgtcgacgtcggccctgagctgcatctcggcgccgccgccggtcctcatgccaccgctcgacctcgacatgaacgtctactcgcggcacttcgccgagcaggcgccggtcatgggctgcggcgacctcatcccgccacccgtcgtgccgcagcacgatggcgcggcggcgtacatgggcgccatgatggcgcccgtgcaggagcaggacaagcagctggtggtcgacctcgccgccacggcggcggaccagctcgccaggatgtgccgcgccggcgagccgctgtgggtgcggcagcgtggcgcggaggtgatggccgtggaggagcacgcgcggatgttcagctggccggtggacggcgcgaagcagggagacggcggcgcggtggcgagggcggaggggacgcgtgacaacgcggtggtcatcatgaacagcatcaacttggtggacgccttcctcgatgcgaacaaatggatggagctgttcccgtcgattgtttgcaaggcaagaacaatccagatcataaaccacggagctgcgtctggtcacctcggcagtggaactctcctcttgatgcaagcagaggtgcagttcttgtcgcctctggtggcggcgcgcgaggtggtgttcttccgttactgcgtgcacaacgccgacgaggggagctgggcgatcgtggatttcccggcggaagggtttgaggaggggctcctccaagcctcggtggtcaggtgccggcggcggccgtccggctgcatcatccaggacatgcccaatggatactccagggtggtgtgggtggagcacatggagatggtcggggaggagaagccgctgcagccggtgttcagggactacgtcgccagcggcgccgccttcggggccacgcgctggctctccatcctccagcgccagtgcgagcgcctcgccagtgagctcgcccgtaacatcgccgacctcggagtgatccgcacccctgaggcaagaacaaatatgatgaagctgtcgcagcggatgatcaccactttctgtgctaacatcagtgcttctggaacccaatcttggacggccctctcggattcaacccaggacactatcagggttacaactcggaagaacactgagcccggacagcccagcggtgtcatcctcaccgctgtctccacaagctggcttccttttacccatcagcaggtgtttgagcttcttgcagatgaacaacagcgctgccagcttgagattttgtcaaacggcggctcccttcatgaggtggcacatattgcaaatggatcacatccaaggaattgcatctctcttcttcgcattaacgctgcaagcaactcgtcacagaatgtggagctcctgctgcaggagagcagcacccaccctgatggtgggagcctggtggtgttcgcgacggtggacgtggacgcaattcaggtgacgatgagcggcgaggatccttcctacatccctctcctccccctgggcttcgccatcttccctgccaccagcccatcacctgctgctgcacccaccatcagctcaagcaccaccaccaccactggcaatggcaatggcgaaaccagtagcactcctccaagaaacagcagcagcaacaacaacaatgcagatgagctgctgcctcccaatggctgcctcctcaccgtcggcatgcaggtgctggccagcgccgtaccttctgccaagctcaacctctcgagtgtcactgcgatcaacagccatgtctgcaacgccattcaccagatcacagctgcactcaaaagttcagcaggtggtgctgggggtgagccggcgtccgatcagtagcaaaggagacctggaggagaggggatcggagcaacatgggatcagacaccaaaatgcctcccaatttatttcgctaacatcgcagtttgtttttctgttagctctcggtctggctggttcatcaggtgcaagggagggtttgacaagaagccaacactaacagctactcaaatctctcctctcttcccgccatatttctgcctctcaaaatgacgaaaatacccccaaccagccaacaagcaaagccatggggggcattttgatcattttgggaagctacttctgctgagaaagaaagaaagaaagaaagggtcttgtcaagctctcacttgcaccaaccagctgattcatgaatttgctgacatcagctctgcaggcattttggtcgtgcatcggtttcttgctactccatccatccctctttaggttcttcctccctttcctcatcaaaagtgagaactgcatgtgaagaaggttagctccttgttttgaatttttgtaataataagatggaagaagaagacttggtagcttgagtgtgtggtttgtgttaagatcgagctagactttgtgtaaggttgaagaagaagaagacattaagcagattgttattaggagatgagataagagaaaggaggagaggagaagtcaagagcgaaccagttgtgacccttcttcacactagaagggggtcttggttcgggaattgacttgttacctctctgcactctttgtctgtaacctttgccctatcttattattactactagtattgttc

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