LOCUS       NM_001423101            1350 bp    mRNA    linear   PLN 05-JUL-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX1-like (LOC4349388), mRNA.
ACCESSION   NM_001423101 XM_015757783
VERSION     NM_001423101.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1350)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI311015.1, AK065404.1 and CI075183.1.
            
            On Jul 5, 2023 this sequence version replaced XM_015757783.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK065404.1, CB649192.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               CI311015.1         1-122
            123-1095            AK065404.1         86-1058
            1096-1350           CI075183.1         281-535
FEATURES             Location/Qualifiers
     source          1..1350
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="10"
                     /map="10"
     gene            1..1350
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="homeobox-leucine zipper protein HOX1-like"
                     /db_xref="GeneID:4349388"
     exon            1..326
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    116..118
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="upstream in-frame stop codon"
     CDS             128..1063
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="OSJNBb0089A17.12; HD-ZIP protein HOX1; Homeodomain
                     transcription factor HOX1; LOC_Os10g41230"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX1"
                     /protein_id="NP_001410030.1"
                     /db_xref="GeneID:4349388"
                     /translation="

MEMMVHGRRDEQYGGLRLGLGLGLSLGVAGGAADDEQPPPRRGAAPPPQQQLCGWNGGGLFSSSSSDHRGRSAMMACHDVIEMPFLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKRGAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAATTTRNNSGAAPARPVPTRPWPPAAAQRSSA"

     misc_feature    212..334
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <272..526
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="HD-ZIP protein N-terminus; Region: HD-ZIP_N;
                     pfam04618"
                     /db_xref="CDD:428039"
     misc_feature    416..607
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    593..766
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(593..604,608..610,659..661,677..679,716..718,
                     722..727,734..739,743..751,755..760)
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(596..598,605..607,725..727,734..739,746..748)
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    761..895
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1);
                     Region: Leucine-zipper"
     misc_feature    761..>850
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     misc_feature    962..1060
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            327..670
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /inference="alignment:Splign:2.1.0"
     exon            671..1350
                     /gene="LOC4349388"
                     /gene_synonym="HOX1; OsHox1; OsJ_031189"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgctttaaaagcttcctcctcctcctcgccaaccaccaccctcagtccctcacctccatttccatcaagcccaagaacgaactcaccacgctagtgttgagaagtggagagagttgagaggaatcaatggagatgatggttcatgggaggagagacgagcagtatggcgggctcaggctcgggcttgggcttgggctcagcctcggcgtcgccggtggtgcagccgacgacgagcagccgccgccgcgccgtggtgccgccccgccgccgcagcagcagctgtgcggctggaacggcggcggtctcttctcctcgtcttcctccgatcatcgggggaggtcggcgatgatggcgtgccacgacgtcatcgagatgccgttcctgcgggggatcgacgtgaaccgtgcgccggcggcagagacgaccacgacgacggcgagggggcccagctgcagcgaggaagacgaggagcccggcgcgtcctcccccaacagcacgctctccagcctcagcggcaagcgcggcgcaccatctgccgccaccgccgccgccgccgccgccagcgacgacgaggactccggcggcggatcccgcaagaagctccgcctctccaaggaccaagccgccgtcctcgaggacaccttcaaagagcacaacaccctcaatcccaagcagaaggcggcgctggcgaggcagctgaatctgaagccgcggcaggtggaggtgtggttccagaacaggagggcgaggacgaagctgaagcagacggaggtggactgcgagctgctcaagcgctgctgcgagacgctcaccgacgagaaccgccgcctccaccgcgagctccaggagctccgcgccctcaagctcgccaccgccgccgccgcgccgcaccacctctacggcgcccgcgtcccgccgcccaccaccctcaccatgtgcccctcctgcgagcgcgtcgcctccgcagccaccaccacccgcaacaactccggcgccgcccccgcgcggccggtgcccacccgcccgtggccgccggcggcggcgcagaggtcgtcggcgtagagaccccactactgattaattagttaattagagatgagtagtggctttttcttaattagcagggtattaattaattacttaattagggttggacccctgtagttttcttgtttatactacgtgtataatttagctctggttttgaactttttaattagtttcataatctttttttttcctatctctcacttcaccctgtttgttgtttactcagcaaagaatatggtgtctttgtataaagtgatgcatgaaatggatcataaaagttttcaatattaattccttca

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