LOCUS       NM_001422962            1459 bp    mRNA    linear   PLN 16-JUL-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX15-like (LOC4347946), mRNA.
ACCESSION   NM_001422962 XM_015757435
VERSION     NM_001422962.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK099568.1, CB655681.1, CB671047.1 and CB678543.1.
            
            On Jun 29, 2023 this sequence version replaced XM_015757435.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB655681.1, CB658016.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04338664, SAMN07627069
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               AK099568.1         1-342
            343-833             CB655681.1         326-816
            834-1351            CB671047.1         88-605              c
            1352-1459           CB678543.1         54-161              c
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="10"
                     /map="10"
     gene            1..1459
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="homeobox-leucine zipper protein HOX15-like"
                     /db_xref="GeneID:4347946"
     exon            1..497
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /inference="alignment:Splign:2.1.0"
     CDS             144..887
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="HD-ZIP protein HOX15; Homeodomain transcription
                     factor HOX15; LOC_Os10g01470; OSJNBa0071K19.5;
                     OSJNBa0096E22.15"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX15"
                     /protein_id="NP_001409891.1"
                     /db_xref="GeneID:4347946"
                     /translation="

MAQDDEDVGLALGLSLGSGGHRRQRESRDEAPSSAAASLLTLRLPAESGGQPQVVVKREVVRAEEEEYEYEYERALYSSSAAAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAAAGASPTAAADRTNKPTAPHLFSPFAKSAAC"

     misc_feature    144..275
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7G737.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(420..431,435..437,486..488,504..506,543..545,
                     549..554,561..566,570..578,582..587)
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    420..584
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(423..425,432..434,552..554,561..566,573..575)
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    588..722
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7G737.1);
                     Region: Leucine-zipper"
     misc_feature    588..704
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     misc_feature    804..884
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7G737.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            498..577
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /inference="alignment:Splign:2.1.0"
     exon            578..1454
                     /gene="LOC4347946"
                     /gene_synonym="HOX15; OsHox15; OsJ_029257"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cctcccccttctccctcttctcttcttcctcatctcacatcgtctctatagctacctaccttcatctctctctagagctagagctagcacacaagagagagggagagagagagagagagagcgcttggttgttggcgtggtggatggcgcaagatgatgaggacgtgggtctagctctgggcctctccctgggctccggcggccacaggcggcagagagaaagtagagacgaagcgccgtcgtcggcggcggcgtccctgctgacgctgaggctcccggcagagagcggggggcagccgcaggtggtggtgaagagggaggtggtgcgggcggaagaggaggagtacgaatacgagtacgagagggcgctctactcgtcgtcggctgcggcggcggacgacgacgagggctgcaacagccggaagaagctgaggctgagcaaggagcagtcggctctgctggaggatcgcttcaaggagcatagcactctcaaccctaagcaaaaggttgctttggcgaagcagctaaacctgaggccaaggcaagttgaggtgtggttccaaaacagaagagccaggacgaagctgaagcagacggaggtggattgcgagcttctgaagcgctgctgcgagacgctgacggaggagaaccgacgcctccatcgtgagctccagcagctcagggctctgacccactccaccgccgccggcttcttcatggccaccaccctccccgtccccgccgccacgctctccatctgcccctcctgcgagcgcctcgccaccgccgccgccgccggagcttcccccaccgccgccgccgaccgcaccaacaagcccaccgccccgcacttgttcagccctttcgccaagtccgccgcctgctagctaaattaatctcgatcatcatcctctccctgcatatgcatgctagcatgattaattaattaatcatcatatcagtgtgtagtgtacatatatatagtttatagtagtacatatattaattcttgcatgcatgcttgcatctagtagtaaatatatatggctatagctagttagctcatcgatcagctggctctctcatgcatatgttcaccccctctgctttaattagttagcttcattttttcacaagttaattaatgtgtgaggaggatggactgagcactgccggccgcatctaggatcgatccagaaatcaaacaaaattttaattcaagttgttggttttgcttgcatctagctatagatggtcacttactggtgatgaattttattgtcaggggagttaagagtgttgtagttagatgacgacgacatgacacctagctagctagctagctcacacacatatatatactgtactctgtacgtgatccatgtattatattgatttgtttcagaaatattatatatcaatgtatattgatttgtttaattcttcagagattaaaaaa

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