LOCUS       NM_001422912            1201 bp    mRNA    linear   PLN 28-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX6-like (LOC4347647), mRNA.
ACCESSION   NM_001422912 XM_015756830
VERSION     NM_001422912.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK103160.1 and CI244407.1.
            
            On Jun 28, 2023 this sequence version replaced XM_015756830.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK103160.1, AK059755.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-651               AK103160.1         3-653
            652-1201            CI244407.1         1-550
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="9"
                     /map="9"
     gene            1..1201
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="homeobox-leucine zipper protein HOX6-like"
                     /db_xref="GeneID:4347647"
     exon            1..425
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..821
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="putative homeodomain leucine zipper protein; HD-ZIP
                     protein HOX6; Homeodomain transcription factor HOX6;
                     LOC_Os09g35910"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX6"
                     /protein_id="NP_001409841.1"
                     /db_xref="GeneID:4347647"
                     /translation="

MDGEEDSEWMMMDVGGKGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEEFVGAGGAATLYSSAEGGGTTTTTTAKLMPHFGSDDVDAGLFLRPSSQHHPPPPHAGAGFTSSEPAADHQSFNFHSSWPSSTEQTCSSTPWWEFESE"

     misc_feature    72..167
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(159..170,171..173,222..224,240..242,279..281,
                     285..290,297..302,306..314,318..323)
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    159..320
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(165..167,288..290,297..302,309..311)
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    324..458
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1);
                     Region: Leucine-zipper"
     misc_feature    324..449
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    651..818
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            426..1195
                     /gene="LOC4347647"
                     /gene_synonym="HOX6; OJ1439_F07.36; OsHox6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccatttcctcttcttcttcctccatatcacacggttttcgtccatcgatcatcagagctcgatcgggcgccatggatggggaggaggacagcgagtggatgatgatggacgttggagggaagggcgggaagggcggcggcggcggcggcgcggcggacaggaagaagcggttcagcgaggagcagatcaagtcgctggagtccatgttcgcgacgcagaccaagctggagccgaggcagaagctgcagctcgccagggagctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaagtccaagcagctcgagcgcgagtactccgccctccgcgacgactacgacgccctcctctgcagctacgagtccctcaagaaggagaagctcgccctcatcaagcagctggagaagctggcggagatgctgcaggagccacgggggaagtacggcgataatgccggggacgacgcgcggtcgggcggcgtcgccggcatgaagaaggaggagttcgtcggcgcgggcggcgccgccacgctctactcgtcggccgagggtggcgggacgacgacgacgacgacggccaagttgatgccccacttcggcagcgacgacgtcgacgcggggctcttcctccggccgtcgtcgcagcatcatccgccgccgccgcacgccggtgccggcttcacgtcctccgagccggccgccgaccaccagtccttcaacttccactcgagctggccgtcgtccacggagcagacctgcagcagcacgccatggtgggaattcgagagcgagtgagcatccacactgttactactaggctactcatggatgatccatcgatcgccacagatcatgcatgccacgatcagaatttcaattcgccgcgaggacggatcaaacctgtactagatcggatcagagcaaacatagcagagaagatgatcaaaccaacagtgatgtgtacatagctttctgtagatcaaaaccccaggcagtctcctctccatccagccatcagcatgcgaaaattctctctctctttttttcccctccaagtcttactcgacttcgatgttgttatcacaacaccacatcatgtaatccagcaacacgccgagatgaaaaaaaggttaaaaagcttatagagttcgttcatttgatggatccaaaaaaaa

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