LOCUS       NM_001422903            3602 bp    mRNA    linear   PLN 28-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC7-like (LOC4344614), mRNA.
ACCESSION   NM_001422903 XM_015793053
VERSION     NM_001422903.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK318563.1 and AP014964.1.
            
            On Jun 28, 2023 this sequence version replaced XM_015793053.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK318563.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMN02298005 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1168              AK318563.1         4-1171
            1169-1171           AP014964.1         2036697-2036699     c
            1172-3033           AK318563.1         1175-3036
            3034-3037           AP014964.1         2034468-2034471     c
            3038-3602           AK318563.1         3039-3603
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..3602
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="homeobox-leucine zipper protein ROC7-like"
                     /db_xref="GeneID:4344614"
     exon            1..491
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    327..329
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="upstream in-frame stop codon"
     CDS             378..2735
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="putative OCL5 protein; Protein RICE OUTERMOST
                     CELL-SPECIFIC 7; GLABRA 2-like homeobox protein 7; HD-ZIP
                     protein ROC7; Homeodomain transcription factor ROC7;
                     LOC_Os08g04190; P0680F05.46; GL2-type homeodomain protein;
                     Os08g0136000"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC7"
                     /protein_id="NP_001409832.1"
                     /db_xref="GeneID:4344614"
                     /translation="

MMIPGRNMSPAMIGRPNGGGGGGGVAYASSSSALSLGQSLLDGHHHQLPSLLQQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPRKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDEIDRISAIAAKYVGKPAAAVSAAYPPLPPSNRSPLDHMGIPGAGADVFGADFDKPLVIELAVAAMEELVRMAQLGEPLWAPALGGEALGEEEYARTFPRGLGPKSPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEVLSTGVAGNHNGALQLMSAEFQMPSPLVPTRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILNAATSFWLPVPPSRVFDFLRDDSTRSEWDILSNGGVVQEMAHIANGRDHGNAVSLLRVNNANSNQSNMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGDNGVAPPCPR"

     misc_feature    order(747..761,768..770,819..821,837..839,876..878,
                     882..887,894..899,903..911,915..920)
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(753..755,765..767,885..887,894..899,906..908)
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    756..917
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1263..1955
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1347..1352,1377..1379,1440..1442,1446..1448,
                     1479..1481,1491..1493,1503..1505,1512..1517,1530..1535,
                     1614..1616,1620..1631,1638..1640,1647..1649,1653..1655,
                     1659..1661,1707..1709,1773..1775,1779..1790,1794..1796,
                     1830..1832,1836..1838,1842..1844,1848..1850,1854..1856,
                     1860..1862,1878..1880,1884..1892,1896..1904,1911..1916,
                     1923..1925)
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            492..917
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /inference="alignment:Splign:2.1.0"
     exon            918..2375
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2376..2776
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /inference="alignment:Splign:2.1.0"
     exon            2777..3602
                     /gene="LOC4344614"
                     /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccgccgccaccgccgcactcttcttcctcctcacatcactccactctgatctctctctttcagacagtagcaagagcagcagcagagagagagagatttttatgtgtgttcttgacgactgcgtgatcggctgtgccgccagatatagatagaccgtacaactgcagcgctagctatatatatgtttcgagtggggtgtgtgtttgtatatcgattgttgatttgttggtagatctgagctctgcgagtgttgcttcgtccatggtggatctctagctatttagggttgttggtctagctagatagctatatctttctctctctctagtactggtgtgtgcatatatttgtatatgctctgagggagagggagaggatgatgatccctggccggaacatgtcgccggcgatgatcggccggcccaacggcggcggcggcggcggcggcgtcgcctacgcttcttcttcctcggcgctctccctcggccagagcttgttggatggacaccaccatcagctgccatcactgctgcagcagcaccacaatggacaccatctgcttgatcagcaccagcagcatcagcatcagcttcccccacaggcgacgacgacgagcgagagcgacggccgtgcccctcgcgacgagctggagatgagcaagtccggtggcagcgacaacctggagagcggcggtggcggtggcggaggtggctccggtggtgatcaggaccccaaccagcgcccccgcaagaagcgctaccaccgccacacccagcaccagatccaggagctcgaggccttcttcaaggagtgcccccaccctgatgacaagcagcgcaaggagctcagccgcgagctcggcctcgagcccctccaggtcaagttctggttccagaacaagcgcacccagatgaagacgcagcatgagagacacgagaacaatgcgctgcgcgcagagaacgagaagctgcgggcagagaacatgaggtacaaggaggcgcttgccaacgcgtcctgccccaactgcggcggtccggccgccatcggcgagatgtccttcgacgagcaccacctccgcctcgagaacgcgcgcctccgcgacgagattgacaggatctccgccatcgccgccaagtacgtcggcaagcccgccgcggccgtctcggccgcgtacccgccgctgccgccgtcgaacaggtcgccgctcgatcatatgggcattcccggcgctggcgccgacgtgttcggcgccgacttcgacaagccgctcgtcatcgagctcgccgtggccgccatggaggagctcgtcaggatggcgcagctcggcgagccgctctgggcgccggcgctcggcggcgaggcgctcggcgaggaggagtacgcgcgcacgttcccgcgcgggctagggcccaagtcgccggagctccggtcggaggcgtcgagggagacggcggtggtgatcatgaaccacgtcagcctcgtggagatgctcatggacgtcgggcagtggacggcgctcttctcgagcatcgtgtcgcgcgcggcgacgctggaggtgctctcgacgggcgtcgccggcaaccacaacggcgcgctgcagctcatgtccgccgagttccagatgccgtcgccgctggtgccgacgagggagacccagttcctgcgctactgcaagcagcaccccgacggcacgtgggccgtcgtcgacgtctccctcgacgggctccgcgccggcgccgggggcggatgccagccggcggcggcgcgcggccaccggcgccgcccctccggctgcctcatccaggagatgccgaacggctactccaaggtgacgtgggtggagcacgtggaggccgacgaccagatggtgcacaacctgtacaagccggtggtgaactccggcatggcgttcggcgctcgccggtgggtggcgacgctggagcggcagtgcgagcgcctggctagcgccatggcgagcaacgtggcgtcctcgggcgacgccggcgtgatcacgacgtcggaggggaggcggagcatgctgaagctggcggagcggatggtggcgagcttctgcggcggcgtgacggcgtcgacgacgcaccagtggacgacgctctccggcagcggcgccgaggacgtccgcgtcatgacgcgcaagagcgtcgacgaccccggccgccctcccggcatcatcctcaacgccgccacctccttctggctccccgtcccgccttcccgcgtcttcgacttcctccgcgacgactccacccgcagcgagtgggacatcctctccaatggcggcgtcgtccaagaaatggctcacatcgccaatggccgcgaccacggcaacgccgtctccctcctccgcgtcaacaacgcgaactcgaaccagagcaacatgctgatactgcaggagtgctgcacggacgcgacggggtcgtacgtgatatacgcgccggtggacgtggtggcgatgaacgtggtgctcaacggcggcgacccggactacgtggcgctgctgccgtcggggttcgccatcctccccgacgggccggacggcggcggcgggtcgctgctgacggtggcgttccagatactggtcgactccgtgcccaccgccaagctgtcgctcggctccgtcgccaccgtcaacagcctcatcgcctgcaccgtcgagcgcatcaaggccgccatcaccggcgacaacggcgtcgcgccgccatgcccacggtgacctcgccggcgtgcccatctatctgtccatcatgtgcaatggggatcaagggagggatcaagagcgaattcggaggtttagcaatgtggggagtcaagaacgcaccgcagactactgtccttgcaaaagtgtagttgctgcttcagttagctagttcatttatcattttttttaatcactatcaccaccaccaaaaaacccccagaaaaattaatcatgagtaaaaaccttaattatccaacacagcagcaacacaacttaggtcctgtgatcatggctgatatatatacactacatatatttatacagtgatatgtcataggctctgagttgtgttgctctcaacaaattcctactcatcatccaaaattaaatttgcttcagagttcagacaaacacattgcatccaatccatgcatatgccccctcttatttgatttcagttaggttagtttcagttaagttattaatgatctgtcacctgcattacatggctcatcaacagttcatcagagttaattagttcggaagcaagcaacactttgcaaggttggttggttggttcgggtattgactcctctttctctctccgggttgccactctctctctagaactcctcttctgatgcaagatttgttaatttcatcatcagctggactaatgcatgcatatgtgtactgcatagtagtacctttaaattcagtttgcaaaaagagtgtgtatcatgtttgtgcttaatttgctctccttgtctattagattgggcttaaactttgcatgcatttggagatttgcagaagtctgtcttgtatcctctctgtgattctcatggacagttcgattaattggactacctttttgcatcc

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