LOCUS       NM_001422866            3975 bp    mRNA    linear   PLN 27-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC6-like (LOC4347635), mRNA.
ACCESSION   NM_001422866 XM_015757135
VERSION     NM_001422866.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014965.1.
            
            On Jun 27, 2023 this sequence version replaced XM_015757135.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00008650, SAMD00020310
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-913               AP014965.1         20574161-20575073   c
            914-1164            AP014965.1         20573810-20574060   c
            1165-1282           AP014965.1         20573597-20573714   c
            1283-2020           AP014965.1         20572747-20573484   c
            2021-2122           AP014965.1         20572557-20572658   c
            2123-2356           AP014965.1         20572226-20572459   c
            2357-2531           AP014965.1         20570966-20571140   c
            2532-2941           AP014965.1         20570479-20570888   c
            2942-3975           AP014965.1         20567972-20569005   c
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="9"
                     /map="9"
     gene            1..3975
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="homeobox-leucine zipper protein ROC6-like"
                     /db_xref="GeneID:4347635"
     exon            1..913
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    737..739
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="upstream in-frame stop codon"
     CDS             749..3364
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="Os09g0526200; GL2-type homeodomain protein; GLABRA
                     2-like homeobox protein 6; HD-ZIP protein ROC6;
                     Homeodomain transcription factor ROC6; LOC_Os09g35760;
                     Protein RICE OUTERMOST CELL-SPECIFIC 6"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC6"
                     /protein_id="NP_001409795.1"
                     /db_xref="GeneID:4347635"
                     /translation="

MSFGGMFDGAGSGVFSYDAGGGGGGGGVHNSRLLPTPPVPKPGGGFAAPGLSLGLQTMDGSQLGDVNRSLAMMGNGGSGSGGDGDSLGRGREEENDSRSGSDNLDGASGDELDPDNSNPRKKKKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMKTQIERHENALLRQENDKLRAENMTIREAMRNPMCASCGGAAVLGEVSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGALGASAAMQSIPDLMGGSSGLTGGPVGSAAMRLPAGIGGLDGAMHAAAADGGAIDRAVLLELALAAMDELVKVAQMDEPLWLPSLDGGFETLNYDEYHRAFARVVGQCPAGYVSEATRESGIAIISSVDLVDSLMDAPRWSEMFPCVVARASTTDIISSGMGGTRSGSIQLMHAELQVLSPLVPIREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDQNGGGGSSSSSYMGCRLLPTGCIVQDMNNGYSKVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQYLAILCSNSLPARDHAAITPVGRRSMLKLAQRMTDNFCAGVCASAAQKWRRLDEWRGEGGGGGGGGGGDGEDKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILANGEAMQEMDHIAKGQHHGNAVSLLRPNATSGNQNNMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVGSGASPNSAAGGGGGSNNTGSLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQASIISP"

     misc_feature    830..907
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V7.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    947..1138
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V7.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(1115..1129,1133..1135,1184..1186,1202..1204,
                     1241..1243,1247..1252,1259..1264,1268..1276,1280..1285)
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    1121..1282
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(1121..1123,1130..1132,1250..1252,1259..1264,
                     1271..1273)
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1808..2482
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1859..1864,1895..1897,1958..1960,1964..1966,
                     1997..1999,2009..2011,2021..2023,2030..2035,2048..2053,
                     2132..2134,2138..2149,2156..2158,2165..2167,2171..2173,
                     2177..2179,2225..2227,2300..2302,2306..2317,2321..2323,
                     2357..2359,2363..2365,2369..2371,2375..2377,2381..2383,
                     2387..2389,2405..2407,2411..2419,2423..2431,2438..2443,
                     2450..2452)
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     misc_feature    3119..3199
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V7.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            914..1164
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1165..1282
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..2020
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2021..2122
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2123..2356
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2357..2531
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2532..2941
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2942..3975
                     /gene="LOC4347635"
                     /gene_synonym="GL2-6; Roc6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgccgcgtgcgagtcagccccacttgcgattgattttttttaccccgtttcatcctctgatcgatctttaccgctagctgcagttttcttgggcggtaacagcagtagcggcctctgttttatctgcgctgctcgtggactctccacatgtccagctttatctaacacgcttgttattatagccattctctccagccaccctctcgcctcctcctcctctcatcatctcccatccttcctcctcctcaactcctctcctctcttcgcttcttctctcatgctagctactactactagcttctccttctcctgtcgcacggtgcggcggaagtggtagtagtagtagctttcttggtttaagcaaggatcggcgaggacggacgccggcggcgaccgagcttggggtgtgtgtgtgtaaagttgtcttctccggcggatgagctgttgtttcttggctcgcgcctccggcgtgtccggcttgttgccttccatgtccgcgacgctgcaataattcgcttccatatttgctgccgccatgccatgtatagccgcgctgctgatgcggccctccagccgttttaatgcgtgccaaatcctctccccgaggctcataaaaattattgaattgttgggatctgaggggatccgccggagttggtaggatcacggtggagtgattttggccggaggaagaagaagaagaagaaaaactggtgtttgttttgtcatttgtagtgagctcgcgtgatgagcttcggtggcatgttcgatggcgccggctccggcgtcttctcctacgacgccggcggcggcggcggcggcggcggagtacacaactcccgcctcctccctacgccgcccgtccccaagcccggcggcgggttcgccgctcccggcctctctctcggcctgcaaactatggacggtagccagctcggcgacgtgaaccggtcgcttgccatgatgggcaacggcgggagcggcagcggcggcgacggcgactcgctgggacgcggccgggaggaagagaacgacagccgctccggcagcgacaacctggacggcgcctccggcgacgaactcgacccggacaacagcaacccgcgcaagaagaagaagcgttatcaccgccacaccccgcagcaaatccaagaactcgaagccgtgttcaaggagtgtccacatcctgacgagaagcaacggatggagctcagccggcggctcaacctcgagagccgccaggtcaagttctggttccagaatcgccgcacccagatgaagacgcagatcgagcggcatgagaacgcgctgctgcggcaggagaacgacaagctgagggcggagaacatgacgatccgggaggcgatgaggaacccgatgtgcgcgagctgcggcggcgcggcggtgctcggcgaggtgtcgctggaggagcagcacctgcgcatcgagaacgcgcggctcaaggacgagctcgaccgcgtctgcgcgctcgccggcaagttcctcggccggccaatctcgagcatctcctccccgggcccgccgtcgctgcaggcgtgctccggcctcgagctcggcgtcggcagcaacggcgggttcgggctcggcgcgctcggggcctcggcggcgatgcagtccatccccgacctgatgggcggctcctccggcctgacgggggggcccgtgggctccgccgccatgcgcctacccgcgggcattggcggcctcgacggcgccatgcacgccgcggcggccgacggcggcgccatcgaccgcgccgtgctcctggagctcgccctcgcggccatggacgagctcgtcaaggtggcgcagatggacgagccgctctggctccccagcctcgacggcgggttcgagacgctcaactacgacgagtaccaccgcgcgttcgccagggtggtcggccagtgccccgccggctacgtctccgaggcgacgcgcgagtccggcatcgccatcatcagcagcgtcgacctcgtcgacagcctcatggacgcgccacggtggtcggagatgttcccgtgcgtggtggcgagagcgagcaccacggacatcatctccagcggcatgggcggcacgcgcagcgggtcaattcaactgatgcacgcggagctgcaggtgctgtcgccgctggtgccgatacgggaggtggtgttcctgcgtttctgcaagcagcacgccgagggcctctgggcggtggtcgacgtctcggtcgacgccgtcctccgccccgaccagaacggcggcggcgggtcgtcgtcgtcgtcgtacatgggctgccgcctcctccccaccggctgcatcgtgcaggacatgaacaatggctactccaaggtcacgtgggtggttcacgcggagtacgacgagacggcggcgcaccagctctaccggccgctgctccgctccggccaggccctcggcgcccgccgctggctcgcctcgctccagcgacagtgccagtatctcgccatcctctgctccaactccctccccgcccgcgaccacgctgcgataacgccggtggggaggaggagcatgctgaagctggcgcagcggatgacggacaacttctgcgcgggggtgtgcgcgtcggcggcgcagaagtggcggcgcctggacgagtggcgcggcgagggtgggggcggcggcggtggcggcggcggggacggggaggacaaggtgcggatgatggcgcggcacagcgtgggcgcgccgggggagccgccgggcgtcgtgctgagcgccaccacgtcggtgcggctccccggcacgctgccgcagcgcgtgttcgactacctccgcgacgagcagcggcgcggcgactgggacatccttgccaacggcgaggccatgcaggagatggaccacatcgccaagggccagcaccacggcaatgccgtctccctcctccgtccaaatgccacaagcgggaaccagaacaacatgctgatcctccaggagacgtgcaccgactcatcgggctccctcgtcgtctacgctccggtggacgtgcagtcgatgcacgtcgtcatgaacggcggcgactccgcctacgtctccctcctcccctccggcttcgccatcctccccgacggccacaacaatggcgcctcgccgtctccggcagaggtcggcagcggcgcctcgccgaactccgccgccggtggcggtggcggtagcaacaacaccgggtcgctggtgacggtggcgttccagatactcgtcaacaacctgccgacggcgaagctcaccgtggagtccgtcgacaccgtcagcaacctcctctcctgcaccatccagaagatcaagtcggcactgcaggccagcatcatctcaccatagataagtggacatttgacgtggattccgactcgaccatttttgagtcgaatcggatgccatctcaaatgtctaacttttgaaggttagaagactgagaggacttccgcggcgggcgatggccgaccgaaactggctgatggatgcaactcaatcgttgatcaggtagagttttcgagaggcgatatgcgagcgaggataaaaataaaattaagttatatatagtgtgtggagtatatttgcatagatgagcaaattaaatggggtgagttgcagagggatcaagtcaagaacgaaccttgcgctaggcttggctcaagctgatgtggtggttcgggtattgacttagtctctggtgaaaataaacccctagggctttgatctcctatatatatctagcagtttgcttaatttaaccattttgtgaagttttttttaattctccaaaatgggggaaatatagagaaacaatactgatcagatccccaagatcgttggtgtttgtttagtttgcataatgttggaatgagttgatatataaacatgtttattttggcatactatgtttaatcagaatgccgttgatagattaattgagaacatcatcaaaatca

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