LOCUS       NM_001422790            1461 bp    mRNA    linear   PLN 25-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX4-like (LOC4347333), mRNA.
ACCESSION   NM_001422790 XM_015757023
VERSION     NM_001422790.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1461)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1461)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK099710.1 and CB655714.1.
            
            On Jun 23, 2023 this sequence version replaced XM_015757023.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK099710.1, AK105484.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-691               AK099710.1         3-693
            692-1237            CB655714.1         107-652             c
            1238-1461           AK099710.1         1240-1463
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="9"
                     /map="9"
     gene            1..1461
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="homeobox-leucine zipper protein HOX4-like"
                     /db_xref="GeneID:4347333"
     exon            1..400
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    310..312
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="upstream in-frame stop codon"
     CDS             331..1164
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="homeodomain leucine zipper protein; HD-ZIP protein
                     HOX4; Homeodomain transcription factor HOX4;
                     LOC_Os09g29460"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX4"
                     /protein_id="NP_001409719.1"
                     /db_xref="GeneID:4347333"
                     /translation="

MKRPGGAGGGGGSPSLVTMANSSDDGYGGVGMEAEGDVEEEMMACGGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVKEEPAASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAGAGAAAAASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHWN"

     misc_feature    331..435
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6K498.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(481..489,493..495,544..546,562..564,601..603,
                     607..612,619..624,628..636,640..645)
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    481..642
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(481..483,490..492,610..612,619..624,631..633)
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    646..780
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6K498.1);
                     Region: Leucine-zipper"
     misc_feature    646..771
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    790..870
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6K498.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1078..1161
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6K498.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            401..747
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /inference="alignment:Splign:2.1.0"
     exon            748..1461
                     /gene="LOC4347333"
                     /gene_synonym="HOX4; OJ1595_D08.21; OsHox4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcgaaaacagaaaggaaaccgagaaagagagagagagagagagaggtagggagggaagaagagtcactccacactccacactctcatcccctggtccctttcttggatcatgagaaaccgcgcaacaaaattgcaattctaggcagcatttggaccggggacttggctacgtggtgtttggccatggatcgcagcgtggaattaagaccggcgaggactcagcgacggaggcacccgcgtcattcctacgcttctgtgcccgtcgtcttctcgcagtgagagagagagagagatcgaccaggcgttcactgaattttactagaactcggcatgaagcgacccggcggtgccggcggcggcggaggcagcccatcgctcgtcacgatggctaattctagtgatgatggatatggaggggttgggatggaggcggagggggacgtggaggaggagatgatggcgtgcggcggcggcggggagaagaagcggcggctgagcgtggagcaggttcgcgcgctggagcggagcttcgaggtggagaacaagcttgagcctgagcggaaggcgcggctggcgcgcgacctcggcctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccattcctacgactccctgcgcctcgatcacgacgcgctccgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggcgaagctcggggacgaggaggcggcggcgagcttcacgtcggtgaaggaggagccggcggcctccgacgggccaccggcggcgggatttgggtcgtccgacagcgactcaagcgcggtgctgaacgacgtggacgcggccggcgccgcgcccgcggcgacggacgcgctggctccggaggcgtgcacgtttctcggcgcgccgcccgccgcgggcgcgggcgcgggcgcagcggcggcggcgagccacgaggaggtgttcttccacggcaatttcctcaaggtggaggaggacgagacggggttcctcgacgacgacgagccgtgcggcgggttcttcgccgacgatcagcccccgccgctgtcgtcgtggtgggccgagcccacggagcactggaactgaagcaaatccggcgtaaccgcagccgagagagagagttggaaaacactatgcctgggggaataaagaattctgcaggaaagcagggtcttatctgcaattttgtaaaaaaaatggacctctacgtacttctctagtctcttttgccaattctcgcgcacattagctgtagcactgcagtgtagtaaaatcctactactccattacctctccaatttctagctctcacttccctacttaaactcatctgagctctaatgtaagcatatgccatccaaaatggaccataaatatgtcact

//