LOCUS       NM_001422772            1628 bp    mRNA    linear   PLN 22-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX11-like (LOC4347205), mRNA.
ACCESSION   NM_001422772 XM_015755543
VERSION     NM_001422772.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014965.1.
            
            On Jun 22, 2023 this sequence version replaced XM_015755543.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020315 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-487               AP014965.1         16675949-16676435   c
            488-828             AP014965.1         16675524-16675864   c
            829-908             AP014965.1         16675337-16675416   c
            909-1628            AP014965.1         16674514-16675233   c
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="9"
                     /map="9"
     gene            1..1628
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="homeobox-leucine zipper protein HOX11-like"
                     /db_xref="GeneID:4347205"
     exon            1..487
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    199..201
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="upstream in-frame stop codon"
     CDS             226..1314
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="putative homeodomain leucine zipper protein CPHB-3;
                     homeodomain leucine zipper protein 11; HD-ZIP protein
                     HOX11; Homeodomain transcription factor HOX11;
                     LOC_Os09g27450"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX11"
                     /protein_id="NP_001409701.1"
                     /db_xref="GeneID:4347205"
                     /translation="

MELGLSLGEAMADAGRELVLGLGMGRREEAAEAGRRDHEVRRELEFGSMSSRCGGSSPEPTVRLTLLPMVPGLGLPWPPPPPPSSESRHLEASTRGFDVNRPPSSGGGGGGGGAEEEQDDVAGAALSSSPNNSAGSFPMDDFSGHGLGGNDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAAAAPDHRPSSFAALFSSPRGFPLSVAPQAQPPTSS"

     misc_feature    304..762
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(751..762,766..768,817..819,835..837,874..876,
                     880..885,892..897,901..909,913..918)
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    751..915
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(754..756,763..765,883..885,892..897,904..906)
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    919..1053
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1);
                     Region: Leucine-zipper"
     misc_feature    919..1050
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     misc_feature    1126..1215
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            488..828
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /inference="alignment:Splign:2.1.0"
     exon            829..908
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1628
                     /gene="LOC4347205"
                     /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tccgggtcacgtgcggcctcgtcaaccggtcaaaccccgccattatcacgcagccacatacgcgccggagggaagcgagcgagagaggtgtgaagtgtgaggtggtcaggtcgtcttcttccttcgctgctgctataaaacctcgcggcggcttgcgcgattacgaggttttccattgctgtgtgtgagtgaggtgagtgagtgagtgacggattgttgggagagatggagctggggttgagcttgggggaggctatggcggatgctgggagggagctggttcttgggcttgggatggggaggagggaggaggcggcggaggcggggaggagggatcatgaggtgaggagggagctggagttcgggtcgatgtcgagcaggtgcggtggttcttcgccggagccgacggtgcggctcacgcttctgcccatggtgcccggccttggcctcccatggccgccgccgccgccgccgtcgtccgagagcaggcatttggaggcgtcgacgcggggattcgacgtgaaccgcccgccgtcgtccggcggcggcggcggcggcggcggcgcggaggaggagcaggacgacgtggccggggcggcactctcgtcgtcccccaacaacagcgccggatccttcccgatggatgacttctccgggcacggcctcggcggcaacgacgcggcccctggcggtggcggcggcgaccgctcgtgctcccgcgccagcgacgaggacgacggcggctccgcgcgcaagaagctccgcctctccaaggagcagtccgcgttcctcgaggagagcttcaaggagcacagcaccctaaaccccaagcagaagctggcgctggcgaagcagctcaacctccggccgcgccaggtggaggtgtggttccagaaccgccgcgccaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgctgcgagacgctgacggaggagaaccggcggctgcagaaggagctcgccgagctccgggcgctcaagacggtgcaccccttctacatgcacctcccggcgacgacactctccatgtgcccctcctgcgagcgcgtcgcctccaactccgccccggccaccgcctcctccgccgcaacatcgtcgacggccgcgccgcccgcggcaccctcatccggcggcattgcggccacctcctcctccgccgccgccgccgcggcgccggaccacaggccgtcgtcgttcgccgcgctgttctcgtcgccgcgtggcttcccgctatccgtagccccgcaggcgcagccgccgacgagctcgtgactcttccaactctccggcgacggcgaggggcctgtttgtaaattcgctcacttttcttttatcgtttttttttgttttgctcctttggttctttgggattttttgtggcttgccaagtggtttagcgagaatccgagggggcagcgcgtctggccgtccgattgggacacgtcgacggcgcacgatgcttaaagaaaaaaaatgttgcaatagagcttattaacctttataatttctgcgattttttgttttctatcaacaccatggtttaaattttacgggtctcttgcaaaccaagagaaaattatgcatta

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