LOCUS       NM_001422567            1872 bp    mRNA    linear   PLN 18-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX5-like (LOC4345576), mRNA.
ACCESSION   NM_001422567 XM_015794772
VERSION     NM_001422567.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI764424.1, CB676299.1, AK100634.1 and CI249704.1.
            
            On Jun 16, 2023 this sequence version replaced XM_015794772.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK100634.1, AK101569.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-381               CI764424.1         2-382
            382-993             CB676299.1         121-732
            994-1322            AK100634.1         994-1322
            1323-1872           CI249704.1         1-550
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..1872
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="homeobox-leucine zipper protein HOX5-like"
                     /db_xref="GeneID:4345576"
     exon            1..610
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    280..282
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="upstream in-frame stop codon"
     CDS             493..1542
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="P0433E10.14-1; homeodomain leucine zipper protein;
                     HD-ZIP protein HOX5; Homeodomain transcription factor
                     HOX5; LOC_Os08g32080"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX5"
                     /protein_id="NP_001409496.1"
                     /db_xref="GeneID:4345576"
                     /translation="

MDPGRVVFDSGVARRACPGGAQMLLFGGGGSANSGGFFRGVPAAVLGMDESRSSSSAAGAGAKRPFFTTHEELLEEEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATITTAAQEVDQPDEHTEAASTTGFATVDGALAAPPPGHQQPPHKDDLVSSGGTNDDGDGGAAVVVFDVTEGANDRLSCESAYFADAAEAYERDCAGHYALSSEEEDGGAVSDEGCSFDLPDAAAAAAAMFGAAGVVHHDAADDEEAQLGSWTAWFWS"

     misc_feature    order(748..756,760..762,811..813,829..831,868..870,
                     874..879,886..891,895..903,907..912)
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    748..909
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(748..750,757..759,877..879,886..891,898..900)
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    913..1047
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6ZA74.1);
                     Region: Leucine-zipper"
     misc_feature    913..1038
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    1033..1251
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6ZA74.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            611..1014
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1858
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcaacaaaattcagaagtcaaaaaaatcccaaaaacaaaaaataataaaaaaaaagaaagagagagacatttcgcatctgctgccctgcctcctctcccatcacctgcccattttttcacattgaggcccctctgaaaatattatatttacaactaggtccctggccgggccggccggccaccggaaggagcacctcgccggagaaggctttgtctcttctttttcttctcctcctcctcctccatcggcggcggcatggggttctcgctgtaccccatgaagacgtcgacgcgcatgctgtggagcaccagcttcttccgccataaggtcgcctcctccttctaagcccacgccctctcgggcggcggcggcgagccggcggcggagcgcgcggttggtaggtgcgcgtgcgtgcgtgaacgggagagcagcttcgagatcgggttttcttgggttcttggagaagggaggagaagagggggaggagagcatggatcccggccgcgtcgtgttcgactccggcgtggcgcggcgggcgtgccccggcggcgcgcagatgcttctcttcggcggcggcggcagcgccaacagcggcggcttcttccgaggcgtgccggcggcggtgctggggatggatgaatcgcggtcgtcgtcgtcggcggcgggggcgggggcgaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagcaggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccggcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagcacgacttcgaccgcctcaaggccgcctacgacgccctcgccgccgaccaccatgccctcctctccgacaacgaccgcctccgcgcgcaggtaatctcattaaccgagaagctgcaagacaaggagacgtcgccgtcgtcggcgaccatcaccaccgcggcgcaggaggtcgaccagccggacgaacacacggaggccgcgtcaaccaccggcttcgccaccgtcgacggcgcattggcggcgccaccgcccggccaccagcagccgccgcataaagatgatcttgtgagcagcggcggcaccaacgacgacggcgatggcggcgcggccgtggtggtcttcgacgtcaccgagggcgccaacgaccgcctcagctgcgagtcggcgtacttcgccgacgccgcggaggcgtacgagcgcgactgcgccgggcactacgccctctcgtcggaggaggaggacggcggcgcggtcagcgacgagggctgcagcttcgacctccccgacgccgccgccgccgccgccgccatgttcggcgccgccggagttgtgcaccacgacgccgcggacgacgaggaggcgcagctcggcagctggaccgcctggttctggagctgatcgatggaagcatggagcattggagccatgctatcaatgaatgaatgaatcaaatgaccttgagaccctcctctccgtcctttcttttgccctatttttaatcgctgttatatgttaattatgtgcaattaaagtgtacgtgttttgtcgtaagttgtgtttgttcaaattgtatgttttgaaggtgtcatgtattcatacacgatatgatatatagacgggatcatgaatgatactcggaaagattggaataattccatgtagtgttgagcaataataaacattttcctccgataagatgtttttatgattagaaaaaaaaaaaaaaaa

//