LOCUS       NM_001422528            1620 bp    mRNA    linear   PLN 17-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 13
            (LOC4345191), transcript variant 1, mRNA.
ACCESSION   NM_001422528
VERSION     NM_001422528.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1620)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1620)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB685002.1, AK111645.1, CB666681.1, AP014964.1 and CB681933.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020310 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                CB685002.1         22-83
            63-111              AK111645.1         29-77
            112-345             CB666681.1         57-290
            346-564             AP014964.1         11759038-11759256
            565-699             AK111645.1         78-212
            700-1395            CB681933.1         138-833             c
            1396-1620           AK111645.1         901-1125
FEATURES             Location/Qualifiers
     source          1..1620
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..1620
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="homeobox protein knotted-1-like 13"
                     /db_xref="GeneID:4345191"
     exon            1..610
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    101..103
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="upstream in-frame stop codon"
     CDS             377..1213
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="isoform 1 is encoded by transcript variant 1;
                     OSJNBb0075O18.121; Homeobox protein OSH45; LOC_Os08g19650"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 13 isoform 1"
                     /protein_id="NP_001409457.1"
                     /db_xref="GeneID:4345191"
                     /translation="

MGGGGEADAARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDDGRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQADSEANMYDPSLDGADNMGFGLPTESERSLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRKSNAGDNNS"

     misc_feature    413..526
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    578..730
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    896..961
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    order(965..979,983..985,1043..1045,1061..1063,1100..1102,
                     1106..1111,1118..1123,1127..1135,1139..1144)
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(971..973,980..982,1109..1111,1118..1123,1130..1132)
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1019..1135
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            611..731
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
     exon            732..919
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1051
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1188
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1620
                     /gene="LOC4345191"
                     /gene_synonym="OJ1705_A03.8; OSH45"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggctttttgcctaccctcctcttcctctacacctcatactcctagctctctacctctctagctagctagctataggtagctagctagtcctcctgctacctaggggggcgacgccgccggacggggaggaggccatggcgttccacggtcacctcccgcacgagatgaccatgcaggcgctcggcgcggacgacgcggcggtggcggcggcggcggcggcgggtggggtcggggcaggcggggcgccggcgtggatgaggtacaacgacgggagcttcctgcacctgcagaccacgtcggactcgtcggcgtcgccgtctggcgctgcggctgcggcggcggctgcggcggcggcgaggacgcggtggcggccgcgatgggcggcggcggcgaggcggacgcggcgcggtgcaaggcggagatactggcgcacccgctgtacgagcagctgctgtcggcgcacgtggcgtgcctccgcatcgccaccccggtcgaccagctcccccgcatcgacgcgcagctcgcgcagtcgcagggcgtcgtcgccaagtactccgccctcgccgccgccgccgccggggacgacggccgcgagctcgaccagttcatgacgcactacgtcttgctattatgttcgtttaaagagcagctacagcagcatgtccgtgttcatgctatggaagcagtaatggcatgctgggaacttgaacaaaaccttcagagtttgacaggtgcctcgcccggtgaaggcacgggagcaaccatgtcagacggtgaagatgatcaggcagatagcgaggcaaacatgtatgatccaagcttggatggagcggataacatgggtttcggccttcccacagaaagcgagcgatccctaatggagcgtgtccgtcaagagctaaagcatgaactaaagcagggttacaaagagaagctgattgacataagagaagaaattcttcgcaagcgaagagcgggaaagctaccgggagacacgacttctacgttaaaagcttggtggcagtctcatgcaaagtggccatatccaacagaggaagacaaggcacggctagtccaagaaacagggctacagctaaagcagatcaacaactggttcatcaaccaaaggaaaagaaactggcacagtaacccatcttcctccaccagcgtcaaaaccaaacgcaagagtaatgcaggtgataacaattcgtagcagatgatcgccgagggctgaacactatgctgggttacagggcaggaggaattcatccaaagcaataggaggacaattgcttagatcaggaaatgttctgcaagatcaggatcaggagccgtatattagagaaccagttatattttatagacaaaactaattgcaagtaaacatatatagttctgtaagcgcttgatttgaagaaaaggggaaatttttccaaaggggttgtataaaatggcgaaatttatatttcagtttctagataccactgggtaatactgctcatagcactggtgttgatgtttttgttctccatgcgtcgtagacaagcggttgaaccgtccgcttcagacgatttttttcacacgtatatatgtatgtattgctgtgggtttatttagctt

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