LOCUS       NM_001422469            3308 bp    mRNA    linear   PLN 16-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC1-like (LOC4344832), mRNA.
ACCESSION   NM_001422469 XM_015794537
VERSION     NM_001422469.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3308)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3308)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK120496.1, CB663655.1, AP014964.1 and CI161652.1.
            
            On Jun 14, 2023 this sequence version replaced XM_015794537.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK120496.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMN02716058
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AK120496.1         1-67
            68-864              CB663655.1         1-797
            865-1034            AK120496.1         865-1034
            1035-1050           AP014964.1         5113254-5113269
            1051-3271           AK120496.1         1037-3257
            3272-3308           CI161652.1         564-600
FEATURES             Location/Qualifiers
     source          1..3308
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..3308
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="homeobox-leucine zipper protein ROC1-like"
                     /db_xref="GeneID:4344832"
     exon            1..199
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            200..508
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    386..388
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="upstream in-frame stop codon"
     CDS             422..2776
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="P0547A06.49; roc1(homeobox protein); P0020B10.22;
                     GLABRA 2-like homeobox protein 1; HD-ZIP protein ROC1;
                     Homeodomain transcription factor ROC1; LOC_Os08g08820;
                     Protein RICE OUTERMOST CELL-SPECIFIC 1"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC1"
                     /protein_id="NP_001409398.1"
                     /db_xref="GeneID:4344832"
                     /translation="

MTPARRMPPVIGRNGVAYESPSAQLPLTQADMLDSHHLQQALQQQYFDQIPVTTTAAADSGDNMLHGRADAGGLVDEFESKSCSENVDGAGDGLSGDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENAQLRAENDKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRVENARLRDEIDRISGIAAKHVGKPPIVSFPVLSSPLAVAAARSPLDLAGAYGVVTPGLDMFGGAGDLLRGVHPLDADKPMIVELAVAAMDELVQMAQLDEPLWSSSSEPAAALLDEEEYARMFPRGLGPKQYGLKSEASRHGAVVIMTHSNLVEILMDVNQFATVFSSIVSRASTHEVLSTGVAGNYNGALQVMSMEFQVPSPLVPTRESYFVRYCKNNSDGTWAVVDVSLDSLRPSPVQKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCERLASAMASNIPNGDLGVITSVEGRKSMLKLAERMVASFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPAAVFDFLRDETSRSEWDILSNGGAVQEMAHIANGRDHGNSVSLLRVNSANSNQSNMLILQESCTDASGSYVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVCRDSNPQ"

     misc_feature    662..766
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6ZAR0.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(737..751,758..760,809..811,827..829,866..868,
                     872..877,884..889,893..901,905..910)
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(743..745,755..757,875..877,884..889,896..898)
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    746..907
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1301..1975
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1385..1390,1421..1423,1484..1486,1490..1492,
                     1523..1525,1535..1537,1547..1549,1556..1561,1574..1579,
                     1658..1660,1664..1675,1682..1684,1691..1693,1697..1699,
                     1703..1705,1751..1753,1793..1795,1799..1810,1814..1816,
                     1850..1852,1856..1858,1862..1864,1868..1870,1874..1876,
                     1880..1882,1898..1900,1904..1912,1916..1924,1931..1936,
                     1943..1945)
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            509..789
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            790..907
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            908..1546
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1648
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..1849
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            1850..2024
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            2025..2296
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            2297..2392
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            2393..2820
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
     exon            2821..3297
                     /gene="LOC4344832"
                     /gene_synonym="GL2-1; ROC1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccccccctctcgcaataactcctcctccccatctccacattcctcccccaaatcccctcttcttcttcttcttcttcttcctcctcctcccatggcgatcggcgtctgcttctagctggagagatctcgcttcgtttcgagctgtccaccggtggttttctcgcatgcgatatcacacgcttcttggaagcacatcagagttcttggtgctgaccttgccctagatctgcttctgactgttgctgttacgtggcgtgcaagctagctatagccatttctgtgtgtgtagctgtactggtggtgaagaagaagatgcaagcgaatgggtggaggagctagaggcttggctggaggaagaagaagaaggggttggtggtggctagctagctagggtgcgtgcttaattacctggcttcgttcatgacgccggcgaggcgcatgccgccggtgatcggccggaacggcgtggcgtacgaatcgccgtcggcgcagctgcccctcacccaggctgatatgctggacagccatcatctgcagcaagcactccagcagcaatacttcgatcagatcccggtgacgacgacggcggcggcggacagcggcgacaacatgctgcacggccgcgccgacgccggcgggctggttgacgagttcgagagcaagtcgtgcagcgagaacgtcgacggcgccggcgacggcctctccggcgacgaccaggaccccaaccagcggccgcgcaagaagcgttaccaccgccatacccagcaccagatccaagagatggaagctttcttcaaggagtgcccgcacccagacgacaagcagcgcaaggagctgagcagggagctgggtcttgaacctctgcaggttaaattctggtttcagaacaagcgcacacagatgaagaaccagcacgagaggcacgagaacgcgcagctgcgggcggagaacgacaagctgcgcgcggagaacatgcgatacaaggaggccctgagcagcgcgtcgtgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcgtcgagaacgcccgcctccgcgacgagatcgaccgcatctccggcatcgccgccaagcacgtcggcaagccccccatcgtctccttccccgtcctctcctccccgctcgccgtcgccgccgcccgctcccctctcgacctcgccggcgcctacggcgtcgtcacccccggcctcgacatgttcggcggcgccggcgacctcctccgcggcgtgcacccgctcgacgccgacaagcccatgatcgtggagctcgccgtcgccgccatggacgagctcgtccagatggcccagctcgacgagccgctctggtcgtcgtcgtcggagccggcggcggcgttgctcgatgaggaggagtacgcgcgcatgttcccgcgcggcctcggccccaagcagtacggcctcaagtcggaggcgtcccgccatggcgccgtcgtcatcatgacgcacagcaacctcgtcgagatcctcatggatgtgaatcaattcgcgacggtgttctcgagcatcgtgtcgagagcgtccacgcacgaggtgttgtccacaggcgtggcaggcaactacaatggtgcactgcaagtgatgtcaatggagtttcaagtgccgtcgccgctggtgccgacgagggagagctatttcgtcaggtactgcaagaacaactccgacgggacatgggccgtcgtcgatgtctctctcgacagcctccgccccagccctgtccagaaatgccggcgcaggccgtctggctgcctcatccaagaaatgcccaatggctactccaaggtgacatgggtggagcatgtggaggtggacgacagctcggtgcacaacatctacaagccattggtgaactccggcctcgcattcggcgcgaaacggtgggtcggcacgctggaccggcaatgcgagcgcctcgccagcgccatggccagcaacatccccaatggcgaccttggagtgattacaagcgtggaggggaggaagagcatgttgaagctggcggagaggatggtggcgagcttctgcggcggcgtgacggcgtcggtggcgcaccagtggacgacgctgtcgggcagcggggcggaggacgtgcgcgtcatgacgaggaagagcgtcgacgaccccggcaggccaccgggcatcgtgctcaacgccgccacctccttctggctccccgtccctcccgccgccgtcttcgacttcctccgcgacgagacctctcgcagcgagtgggacattctgtccaacggcggcgccgtccaagaaatggctcacattgccaacggccgtgaccatggcaactctgtctcgcttcttcgtgtcaatagtgcaaattcaaaccagagcaacatgctgatcctgcaagagagctgcacggacgcgtcgggctcctacgtggtgtacgcgccggtggacatcgtggcgatgaacgtggtgctcaacggcggcgacccggactacgtggcgctgctgccgtcggggttcgccatccttcccgacgggccgtcggggaacgcgcaggccgccgtcggggagaacggctccggctccggcggggggtccctcctgacggtggcgttccagatcctcgtcgactccgtgccgacggcgaagctctcgctgggctccgtcgcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggccgccgtctgcagggacagcaaccctcagtagtagcaccggcttcaaccaaatatgatcacgaacaatgttccaaggagcagcaaaattttggagtttgattcagcagtagggagtcaagaacgcacctcaaactctccttgccatgtggtgcccttgctagtgaagaatttgcgaggaaaccgacgcgtttgcgagaaaattttcgcgaagatacatagtgtcaccactatgcaaggggggatggttcgggcattgacttccaccttttgattttcatcaaatgcatcgaagagtggatgctgctaccttgttgtttttctgaatctctatgttagggcttcttttaccatgtttaaaaagggctatgaagcctcatttttatctgtactgttgtgatgtgttgtctgtttgttcagacttcaggttcctgtcccttagctaggagttgagaatagagagattcatgtccccccttttggattttatcacatttccgatgatttgtagacttgtggttgttgcttgttggtcattaccattcttgtctcaaaaaaaaaaaaaa

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