2024-04-29 18:40:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001422295 1415 bp mRNA linear PLN 06-JUN-2023 DEFINITION Oryza sativa Japonica Group WUSCHEL-related homeobox 11-like (LOC4344325), mRNA. ACCESSION NM_001422295 XM_015790233 VERSION NM_001422295.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1415) AUTHORS Cheng S, Tan F, Lu Y, Liu X, Li T, Yuan W, Zhao Y and Zhou DX. TITLE WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice JOURNAL Nucleic Acids Res 46 (5), 2356-2369 (2018) PUBMED 29361035 REMARK GeneRIF: WOX11 interacts with the H3K27me3 demethylase JMJ705 to activate gene expression during shoot development in rice. REFERENCE 2 (bases 1 to 1415) AUTHORS Zhao Y, Cheng S, Song Y, Huang Y, Zhou S, Liu X and Zhou DX. TITLE The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling JOURNAL Plant Cell 27 (9), 2469-2483 (2015) PUBMED 26307379 REMARK GeneRIF: The interaction between rice ERF3 and WOX11 promotes crown root development by regulating gene expression involved in cytokinin signaling. REFERENCE 3 (bases 1 to 1415) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK063503.1, CI437951.1 and CI442011.1. On Jun 6, 2023 this sequence version replaced XM_015790233.2. ##Evidence-Data-START## Transcript exon combination :: AK063503.1, AK073232.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020311 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1282 AK063503.1 1-1282 1283-1400 CI437951.1 299-416 1401-1415 CI442011.1 405-419 FEATURES Location/Qualifiers source 1..1415 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..1415 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="WUSCHEL-related homeobox 11-like" /db_xref="GeneID:4344325" exon 1..708 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /inference="alignment:Splign:2.1.0" misc_feature 102..104 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="upstream in-frame stop codon" CDS 114..902 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="LOC_Os07g48560" /codon_start=1 /product="WUSCHEL-related homeobox 11" /protein_id="NP_001409224.1" /db_xref="GeneID:4344325" /translation="
MDGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASSLGMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSSSAAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTRSS"
misc_feature 114..176 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="propagated from UniProtKB/Swiss-Prot (Q0D3I7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 174..332 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cl00084" /db_xref="CDD:444687" misc_feature 348..458 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /note="propagated from UniProtKB/Swiss-Prot (Q0D3I7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 709..884 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /inference="alignment:Splign:2.1.0" exon 885..1415 /gene="LOC4344325" /gene_synonym="OsJ_25623; OsWOX11; WOX11" /inference="alignment:Splign:2.1.0" ORIGIN
aagccaattaagcgaattaagcacacatcaattgaccaaacctatctctctatctctctcgagctagcgagctctaggtgttcgacaccgaacaaggcagctagctagtggcgatggacggcggccacagcccggacaggcatgcggcggcggcggcgggggagccggtgaggtcgcggtggacgccgaagccggagcagatactcatcctggagtccatcttcaacagcggcatggtgaacccgcccaaggacgagaccgtccgcatccgcaagctgctcgagcgcttcggcgccgtcggcgacgccaacgtcttctactggttccagaaccgccgctcgcgctcccgccgccgccagcgccagctgcaggcgcaggcgcaggcggccgcggccgccgcctcgtcgggatctcctccgactgcttcgtccggtggcctcgcgcctggccacgccggctcgccggcttcgtcgctcgggatgttcgcgcacggcgccgccgggtacagctcctcgtcgtcctcatcgtggccgtcctcgccgccgtcggtggggatgatgatgggggacgtggactacgggggcggcggcgacgacctgttcgccatctcgaggcagatggggtacatggacggcggcggcggctcgtcgtcgtcggcggccgccggtcagcatcagcagcagcagctctactactcgtgtcaacctgcgacgatgacggtgttcatcaacggagtggcgacggaggtgccaaggggaccgatcgatctgagatcaatgtttgggcaggacgtgatgctggtgcattcaacgggtgctcttcttccagccaacgagtacggcatcctcctccattctctccagatgggcgagagctacttcctggtcacgaggtcgtcttgatcgagttgagcgattcgtcgattgattgatcgatggcaacgtacgtattgtgtcagcaagatttaggtaccccttgtccgttggatcagatcgatatgcaagcaacgcatgctttgcaggtgccggccggttaattacgcgatcgatcgagctagcagatgatgaatgctgcacgtacgcatggcaattgtcactgcgacgagcctgcatatatatgaacgatccattgatcgtcattctagcgaccaagcagcacgatagtacaagtatatactatacaatgcaattgcagcgacgaactagttaattataatacagataatgcatgtgtacttctgtggccatacatatatatatagagagagaggggattaattactatattcgtttttcatctagctggtcgatctctgtgtgtacttgtatgtatcccgttctcgatctttatatcagaatattttatatatgtatattttacaattatatatatagccgtctcgatcgccaagcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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