LOCUS       NM_001422259            1413 bp    mRNA    linear   PLN 05-JUN-2023
DEFINITION  Oryza sativa Japonica Group UDP-arabinopyranose mutase 3-like
            (LOC4343849), mRNA.
ACCESSION   NM_001422259 XM_015792494
VERSION     NM_001422259.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK061294.1 and CI132182.1.
            
            On Jun 5, 2023 this sequence version replaced XM_015792494.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK061294.1, CF307099.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1320              AK061294.1         1-1320
            1321-1413           CI132182.1         408-500
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..1413
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="UDP-arabinopyranose mutase 3-like"
                     /db_xref="GeneID:4343849"
     exon            1..386
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..1151
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /EC_number="5.4.99.30"
                     /note="OSJNBb0040H10.21; putative reversibly glycosylated
                     polypeptide; LOC_Os07g41360; Reversibly glycosylated
                     polypeptide 3; UDP-L-arabinose mutase 3"
                     /codon_start=1
                     /product="uDP-arabinopyranose mutase 3"
                     /protein_id="NP_001409188.1"
                     /db_xref="GeneID:4343849"
                     /translation="

MASSDAAAAQAATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPKKTIRVPEGFDYELYNRDDINRILGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLNPSTPFFFNTLYDPYRDGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVKPLERNSRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVITDHLGLGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQSASLPKEADTVQKCYLELAKQVRAKLGKVDGYFNKLADSMVTWIEAWDQLNPPKGAVATANGTAKSK"

     misc_feature    87..1109
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="reversibly glycosylated polypeptide; Provisional;
                     Region: PLN03180"
                     /db_xref="CDD:215615"
     misc_feature    372..380
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Z4G3.1);
                     Region: DXD motif. /evidence=ECO:0000250|UniProtKB:Q8H8T0"
     misc_feature    516..518
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="N-linked (Glc...) arginine.
                     /evidence=ECO:0000250|UniProtKB:Q8H8T0; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4G3.1); glycosylation site"
     misc_feature    516..518
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="Required for activity.
                     /evidence=ECO:0000269|PubMed:20149347; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4G3.1); other site"
     misc_feature    537..539
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /note="Required for activity.
                     /evidence=ECO:0000269|PubMed:20149347; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4G3.1); other site"
     exon            387..637
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /inference="alignment:Splign:2.1.0"
     exon            638..806
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /inference="alignment:Splign:2.1.0"
     exon            807..1413
                     /gene="LOC4343849"
                     /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cccgacctccacctccacctccacctctacctcctcctccgccaccggcaatggcttcctccgacgccgcggccgcgcaggcggcgacgccgctgctgaaggacgagctggacatcgtgatcccgacgatccgcaacctggacttcctggagatgtggaggcccttcttccagccgtaccacctcatcatcgtccaggacggcgaccccaagaagacgatccgggtgcccgagggcttcgactacgagctctacaaccgcgacgacatcaaccggatcctcggccccagggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctacatggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgctaaagacccatcaggaaaggatatcaatgcacttgagcagcacatcaagaaccttctgaacccttccactccatttttcttcaacactttgtatgacccgtaccgtgatggcgctgattttgtccgtgggtaccccttcagcctccgtgagggtgccccgactgccgtttctcatgggctttggctcaacattccagactatgatgcccctacccagcttgtcaagcctcttgagaggaacagcaggtatgtggatgctgttatgacaatcccgaagggcactttattcccgatgtgtggaatgaaccttgcttttgaccgtgacctcatcggtcctgcgatgtactttggtcttatgggtgatggccagcctattggtcgttacgacgatatgtgggcaggatggtgcaccaaggtgattaccgatcacttgggtttgggtgttaagactggccttccctacatctggcacagcaaagcgagcaacccctttgtgaacctcaagaaggaatacaacggcatattctggcaggaggagctgatccccttcttccagtctgcgtccctcccgaaggaggccgacactgtccagaagtgttaccttgagctggccaagcaagtgagggcgaagctcgggaaggtcgatggctacttcaacaagctcgccgactccatggtcacatggattgaggcctgggatcagctgaacccaccaaagggagctgttgccaccgcaaacggcactgccaagagcaagtgagagggcggtagtataaaaacttcgtttgttcatgtgaactgcttatactgaaataccgaaatacttttggttttgttagtgctgattgaactgagatcgcttcagcgttgtaacttcaaatgtgtcacctccctggacaaccgtcctggctgttctatggtatttacaattttttttttctttttggtgtgatgaaacagttgtaatgtcaggatcgaatcaccttcaaattagaataaagatattggttatgtttacatat

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