LOCUS       NM_001422247            1137 bp    mRNA    linear   PLN 05-JUN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX14-like (LOC4343726), mRNA.
ACCESSION   NM_001422247 XM_015790693
VERSION     NM_001422247.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Shao J, Haider I, Xiong L, Zhu X, Hussain RMF, Overnas E, Meijer
            AH, Zhang G, Wang M, Bouwmeester HJ and Ouwerkerk PBF.
  TITLE     Functional analysis of the HD-Zip transcription factor genes
            Oshox12 and Oshox14 in rice
  JOURNAL   PLoS One 13 (7), e0199248 (2018)
   PUBMED   30028850
  REMARK    GeneRIF: The findings suggest that Oshox12 and Oshox14 may be
            involved in the regulation of panicle development.
            GeneRIF: The encoded protein binds to (CAAT(A/T)ATTG). It is
            predominantly expressed in reproductive organs and is localized to
            the nucleus. Overexpression of the gene results in plants
            exhibiting sheathed panicles which can be overcome by application
            of gibberellic acid.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK121889.1, AY559047.1 and CI087934.1.
            
            On Jun 5, 2023 this sequence version replaced XM_015790693.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK121889.1, AY559047.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               AK121889.1         3-151
            150-771             AY559047.1         155-776
            772-1137            CI087934.1         161-526
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..1137
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="homeobox-leucine zipper protein HOX14-like"
                     /db_xref="GeneID:4343726"
     exon            1..279
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    171..173
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="upstream in-frame stop codon"
     CDS             201..923
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="P0453G03.37; homeodomain protein-like; homeodomain
                     leucine zipper protein 14; HD-ZIP protein HOX14;
                     Homeodomain transcription factor HOX14; LOC_Os07g39320"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX14"
                     /protein_id="NP_001409176.1"
                     /db_xref="GeneID:4343726"
                     /translation="

MDRYGEKQQQQQMFASYVDASLLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPSSSFSTGTCQPPSFGGGDHLGDDDLVYVPEYGGYADNSVVEWFSLYGLI"

     misc_feature    276..392
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XI85.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(384..392,396..398,447..449,465..467,504..506,
                     510..515,522..527,531..539,543..548)
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    384..545
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(384..386,393..395,513..515,522..527,534..536)
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            280..629
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /inference="alignment:Splign:2.1.0"
     exon            630..1137
                     /gene="LOC4343726"
                     /gene_synonym="hox14; OJ1301_C12.13; OsHox14; OsJ_023919"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtggtggtggtggtgcgtggtcctcttctccatccagagacaatccagttcagttcagtttcctctctccctcctgtcctcacctcacgcttgacaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaaggctgaactgagctgagctgatcgagctagtgtgcgagacggcatggaccgatacggcgagaagcagcagcagcagcagatgtttgcctcctacgtggacgcctccctcctagcagccagcggtgaggtgcagggcgagaggccgagagcgcggaggaggaggaggcgtggggcgaggtgcgttggcggcggcggcggtggtggcgaggtggacggaggggacccgaagaagcggcggctgagcgacgagcaggtggagatgctggagctgagcttccgggaggagcggaagctggagaccgggcggaaggtgcaccttgcctccgagctcgggctcgaccccaagcaggtggccgtctggttccagaaccgccgcgcccgccacaagagcaagctgctcgaggaggagttctccaagctcaagcacgcccacgacgccgccatcctccacaaatgccacctcgagaacgaggtgctgaggctgaaggagaggctggtggtcgccgaggaggaagtgaggcggctcagatcagcggcggggagccacacggcctccggagaaggcggagacatcatgggcttaggcggcagcggcgcctgcgtcgccgggagcccgagctcgtcgttctcgacgggtacctgccagccgccgagcttcggcggcggagatcacctcggagacgatgacctggtgtatgtcccggagtacggcggctacgctgataacagtgtggttgagtggttcagcctgtatggattgatctaacgaagatcaagttgatgatggcatgtgcggggaatttagttagtcatagtgttaattaagctgtatggtgatcgatcgaactgatatggtcagctctaagtgtgtgtgtttaattatgtacataaagtgattaatggcaaaacctggccagctagctagtaatgtattaatattagtagttcgcttaaaaaagatcagatgtgtgttcatatca

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