LOCUS       NM_001422028            1329 bp    mRNA    linear   PLN 02-JUN-2023
DEFINITION  Oryza sativa Japonica Group thioredoxin H2-1-like (LOC4342618),
            mRNA.
ACCESSION   NM_001422028 XM_015791492
VERSION     NM_001422028.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB681256.1 and AK241734.1.
            
            On May 31, 2023 this sequence version replaced XM_015791492.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK241734.1, CI656976.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-686               CB681256.1         21-706
            687-1329            AK241734.1         79-721
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..1329
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="thioredoxin H2-1-like"
                     /db_xref="GeneID:4342618"
     exon            1..785
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    558..560
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="upstream in-frame stop codon"
     CDS             651..1067
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="OSJNBb0003E08.27; putative thioredoxin;
                     LOC_Os07g09310"
                     /codon_start=1
                     /product="thioredoxin H2-1"
                     /protein_id="NP_001408957.1"
                     /db_xref="GeneID:4342618"
                     /translation="

MGGAFSTSKPKPAAGEEGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTINTLRSSSSSTATTT"

     misc_feature    651..710
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    756..1025
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="TRX family; composed of two groups: Group I, which
                     includes proteins that exclusively encode a TRX domain;
                     and Group II, which are composed of fusion proteins of TRX
                     and additional domains. Group I TRX is a small ancient
                     protein that alter the redox...; Region: TRX_family;
                     cd02947"
                     /db_xref="CDD:239245"
     misc_feature    795..797
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="Deprotonates C-terminal active site Cys.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4I3.1); other site"
     misc_feature    order(813..815,822..824)
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239245"
     misc_feature    816..818
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="Contributes to redox potential value.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4I3.1); other site"
     misc_feature    819..821
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /note="Contributes to redox potential value.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q6Z4I3.1); other site"
     exon            786..908
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1329
                     /gene="LOC4342618"
                     /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gttccagatgaacatatgagttttacgggattctgatgctttctgttacttttgatgtgcatatggtcaatgggtcatctcgctccttaaaccaaacggccccccaatgaatcagataccttcatccacctactagcagtactcatcaaggtgttctagataatgcactcttaattaataaaaatggcactataataaaccacagctcacagtacagcagccttcagttttccttttctagtggagcagttgagtttagcctgcggttttttgagacgagcagagtagttcagttgttagtattgtcctctttcttatgctacaagtgaacttatgctttagttcctctatcccaaaataaattaatctcatattagatatgacatatttcagtacgatgatcacaaactaagctcgtactgtcacatctaagatacgaggtggtacgatgttggtttatttgggacaggtgggaggttggtaagtgagaatattaaatattgtaatattttgtaaagagaacttatgctctaagtaagaatattaaatgtgagtcatgagtcaacggggtcaagcccctacaaaagccaagaaccccaagcccttccagctgcagacttgcagtgcctcgatcagctcactgtaacaagatgggcggcgccttctcgacgtcgaagccgaagcccgccgccggcgaggagggcggcgagtccgccgtggtggccgtccactccaaggccaagtgggacgagctgtgggacgcccacaagaacaccacaaagctggtggtgatagacttctcggcgtcgtggtgtgggccgtgcaagatgatggagccggtgttcaaggagatggccggccgcttcaccgacgtcgccttcctcaaggtcgacgtcgacgagctcgcggaggtggcgcggacctggcgggtggaggcgatgccgacgttcgtgctggcgaggggcggcgaggaggtcggccgcatcgtcggcgccgacaaggacgagctcgagaagaccatcaacacgctcaggtcatcgtcgtcgtcgacggcgacgacgacgtgattggttgggagatgcataaataaacatgttgtcatgttcatcagtcatcaccacctagctctgctgctggttaatttaagtactaccactaccttagttaattagctctcccggtttgcctaataaatattccgcattgtaatatagccaacttaattagttcgtatgttcgcgtgtgttgtgatcgtctgctagttatgtacagtcttgaagcctgagtgctggagctaataaagatttgcataacttggattggattttc

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