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2024-04-29 11:53:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001422011            3539 bp    mRNA    linear   PLN 30-MAY-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 14-like (LOC4342603),
            mRNA.
ACCESSION   NM_001422011 XM_015789956
VERSION     NM_001422011.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK100285.1, CI161597.1 and CI229597.1.
            
            On May 30, 2023 this sequence version replaced XM_015789956.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK100285.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020311 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2756              AK100285.1         2-2757
            2757-3027           CI161597.1         1-271
            3028-3539           CI229597.1         39-550
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..3539
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /note="protein argonaute 14-like"
                     /db_xref="GeneID:4342603"
     exon            1..764
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..3245
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /note="OSJNBb0002L09.2; putative leaf development protein
                     Argonaute; OSJNBb0084L07.14; LOC_Os07g09020"
                     /codon_start=1
                     /product="protein argonaute 14"
                     /protein_id="NP_001408940.1"
                     /db_xref="GeneID:4342603"
                     /translation="
MASRGGDGLVGGGRGPLGGRDGRGRGPAGGRGGGRGGGHPQQQQQQQPGYGRGDGGGRGPAPAAGGVVGRGTGGGGGGGRGDGGRGRGRGGGGGDGVRPAMAAAPAASTPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAAAQPPPAAAAVSALARDVGRQLAVVAGGGRPAPPAAPPAPIPVSSKGVAPPSRPGFGTVGERIVVRANHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGISFAYDGSKALYTAGKLPFDSMDFKIKLGKELREIEYKVTIRRAGQADLHHLHEFIAGRQRDSQQQTIQALDVVLRESPSLNYVIVSRSFYSTMFGRQDIGDGLECWKGYYQSLRPTQMGLSLNIDISSTPFFKPISVVEYVKNCLGTPTNANGPDPRRPLSDIDRLKVKKALRGVRVETTHQGKSSKYKITTITSEPLSQLNFSMDGTTQTVIQYFSQRYKYRLQYTSWPCLQSGNPSNPIYLPMEVCTIVEGQRYSKKLNDKQVTGLLRATCQPPQKREQKIIEMVQHNNYPADKVVSDFRINISNQMATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKWTCVNFSRMHIDAVHRLCGELVYTCNAIGMVFNEMPEIEVGSAAPNNIEAALSNIHTRAPQLQLLIVILPDVNGYYGRIKRVCETELGIVSQCLKPGRKLLSLDRQFLENVSLKINVKAGGRNSVLQRPLVPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQEIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFYRDGVSDGQFLHVLLYEMDAIKKAIASLDPAYRPLVTFVVVQKRHHTRLFPEVHGRQDLTDRSGNVRPGTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQPPAVRRLPQIKENVKDVMFYC"
     misc_feature    87..467
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Z4F1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    594..668
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6Z4F1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    660..3242
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            765..961
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1102
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..1233
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1361
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1465
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1466..1598
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1599..1715
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1716..1823
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1824..1895
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            1896..2015
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2016..2154
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2279
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2280..2408
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2409..2590
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2591..2656
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2657..2720
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2721..2856
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2857..2930
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            2931..3025
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            3026..3057
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
     exon            3058..3528
                     /gene="LOC4342603"
                     /gene_synonym="AGO14; OsAGO14"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atcaaccctctctctctctctctctctgcctcggcgacctcgcctccgcttactctcccacccagacaaaaccctctttgcctctcatggcgtcacgcggcggcgacggcctcgtcggaggagggcgcgggcccctcggtgggcgggacggtagagggcgcggcccggccggtgggcgaggcggcggaaggggaggcggccacccgcagcagcagcagcagcagcagccgggctacggccgcggcgacgggggcggccgtggtcctgcccctgctgctggtggtgtcgttggtcgaggaactggaggcggcggcggcggcgggcgcggggacggcggacgcggccgtggccgtggcggcggcggcggagatggcgttcgccctgctatggccgcggctccggcggcgtcgactcctggtccggttgctgttgctgctcggagtactcctcctcctactcccgcggtccagatccccgcggtggcgtcgtcgtcgtcagcgcagccagcggcggcggcgcagcctcctccggcagccgcggcggtttctgccctcgcgagggacgttgggaggcagctggctgtcgtggcgggcggcggccgccccgctccccccgcggcgccgccggcgcccatcccggtgtcgagcaagggcgtcgcgccaccgtcgcggccggggttcgggacggtgggggagaggatcgtggtgcgcgcgaaccatttcctcgtccgcgtctccgacaacgacatgatctacctctacgacgtgagtttgagtcccccaccaaagaccaggcgcatcaacagggtagtgatgtctgagctggccaggttgcaccgtgagtcgcatctcggtggcataagcttcgcgtacgacggaagcaaggccctgtacactgcaggaaaactgccgttcgactccatggacttcaagatcaagctgggcaaagagctcagggaaatcgagtacaaggtgacaattcgacgtgctggccaagcagatctgcaccacctgcacgagttcatcgccggccggcagagggactctcagcagcaaacgatccaagcactggacgttgtactgagggagtcaccttctctgaactatgtcatcgtttctcggtcgttctactccactatgttcggccgacaagacattggtgatgggctggaatgctggaaaggatactatcagagcctgcgcccaactcagatgggactctcattgaacatagacatatcctctaccccattcttcaaacctatcagcgtggtagaatatgtcaagaattgtctgggcacacctactaatgctaatggccctgaccctaggcggcctctttctgacattgatcgcctgaaggttaagaaagcactacggggagttcgtgttgaaacaacacaccaggggaagagcagcaagtacaagatcactacgattacatctgagccactgagtcagctgaacttttctatggatggaactacccagactgttattcagtacttctcgcagcggtacaaatacaggctgcagtacacgtcttggccctgtctgcaatccggcaacccttctaaccctatatatttgccaatggaggtatgcaccattgtagaagggcaaagatactccaagaagctcaatgacaaacaagtgactggcctcctgagagcaacatgccagcctccccagaaaagggagcagaaaatcattgagatggttcaacacaacaactacccggctgataaggtggtgagtgattttagaattaatatttccaatcagatggccactatgccagctcgcgtgctgcctgcgcccacgctgagataccatgactctggaaaggagaaaacttgtaatcccagagttgggcaatggaatatgatcaataagaaaatggttggtggagctgtggttcaaaagtggacttgcgtgaatttttcacgcatgcatattgatgccgtgcacagactatgcggcgaactagtttatacatgcaatgctattggcatggttttcaatgaaatgccagagatagaggtggggtcagctgctcctaataacatcgaagctgccctgagcaacattcacacaagggctcctcaactccagctgctcattgtgattctcccagatgttaatgggtattatggaagaattaagagggtgtgtgagactgaacttgggatagtatcccagtgcctcaagccaggccgcaagctcttgagcttagacaggcagttcctggaaaatgtctcactcaaaatcaatgtcaaggctggaggacgcaactcagttcttcagagacctcttgtacccggtgggcttgaaaacacaacaataatttttggtgccgatgtcacccatcctgcttctggagaggactcatcggcgtcgatcgcagctgtggtggcctccatggactggcctgagatcaccaagtacaaagccctcgtctctgcccagccacctcggcaggagattatacaagatctcttcaccatgactgaagttgcgcagaatgctgatgctccagcacagaaggctgaaggttcgaagaagaatttcatatgcggcggaatgttcagggagttgcttatgtcattctacagtaagaatgctaaacgtaagcctcaaaggataatattttacagggatggtgtaagtgatggacaattccttcatgttctgctctatgagatggacgcaatcaagaaggctattgcatctttggacccagcatacaggcccctggtgacatttgtggttgtccagaagaggcaccacacaaggctcttccctgaggtgcatggaaggcaagatctgacggacagaagtggaaatgttcgtccaggaaccgtggttgacactaacatttgccaccctagtgagttcgacttctacctgtgcagccatgccggaatccagggaacaagcagaccaacccactaccacgttctccatgacgagaaccgttttagtgccgatcagctgcagatgctcacttacaatttgtgttacacctacgctcgatgcacccggtctgtctctgttgtccctccagcctactacgctcacctggcagcattccgggcgaggtactacgatgagccccccgccatggacggagcttcgtcggtcggcagcggcggcaaccaggcggcggccggcggccagccaccggcggtgcgccgcctcccgcagatcaaggagaacgtcaaggacgtgatgttctactgctgatcgaatcggcgcctagcttgggttttaactacaaacattttgttggtcgctcgtcagtattcattcaggctgttagtgtactgtgctatctctgaaattgtgatggtgtcatttgggacatgttaacctgttgttgaacttgtgatctgtgatgttgatgcagctgctactcgatagttgtatgtttctcgaagtgtatttttttggggttatgtgtgatgtttgaaagacaggtcatgatctaaattatttctgcggattagttgacatgccatgatctaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]