2024-04-29 11:53:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001422011 3539 bp mRNA linear PLN 30-MAY-2023 DEFINITION Oryza sativa Japonica Group protein argonaute 14-like (LOC4342603), mRNA. ACCESSION NM_001422011 XM_015789956 VERSION NM_001422011.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3539) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK100285.1, CI161597.1 and CI229597.1. On May 30, 2023 this sequence version replaced XM_015789956.2. ##Evidence-Data-START## Transcript exon combination :: AK100285.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMD00008650, SAMD00020311 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-2756 AK100285.1 2-2757 2757-3027 CI161597.1 1-271 3028-3539 CI229597.1 39-550 FEATURES Location/Qualifiers source 1..3539 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..3539 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /note="protein argonaute 14-like" /db_xref="GeneID:4342603" exon 1..764 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" CDS 87..3245 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /note="OSJNBb0002L09.2; putative leaf development protein Argonaute; OSJNBb0084L07.14; LOC_Os07g09020" /codon_start=1 /product="protein argonaute 14" /protein_id="NP_001408940.1" /db_xref="GeneID:4342603" /translation="
MASRGGDGLVGGGRGPLGGRDGRGRGPAGGRGGGRGGGHPQQQQQQQPGYGRGDGGGRGPAPAAGGVVGRGTGGGGGGGRGDGGRGRGRGGGGGDGVRPAMAAAPAASTPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAAAQPPPAAAAVSALARDVGRQLAVVAGGGRPAPPAAPPAPIPVSSKGVAPPSRPGFGTVGERIVVRANHFLVRVSDNDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGISFAYDGSKALYTAGKLPFDSMDFKIKLGKELREIEYKVTIRRAGQADLHHLHEFIAGRQRDSQQQTIQALDVVLRESPSLNYVIVSRSFYSTMFGRQDIGDGLECWKGYYQSLRPTQMGLSLNIDISSTPFFKPISVVEYVKNCLGTPTNANGPDPRRPLSDIDRLKVKKALRGVRVETTHQGKSSKYKITTITSEPLSQLNFSMDGTTQTVIQYFSQRYKYRLQYTSWPCLQSGNPSNPIYLPMEVCTIVEGQRYSKKLNDKQVTGLLRATCQPPQKREQKIIEMVQHNNYPADKVVSDFRINISNQMATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKWTCVNFSRMHIDAVHRLCGELVYTCNAIGMVFNEMPEIEVGSAAPNNIEAALSNIHTRAPQLQLLIVILPDVNGYYGRIKRVCETELGIVSQCLKPGRKLLSLDRQFLENVSLKINVKAGGRNSVLQRPLVPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQEIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFYRDGVSDGQFLHVLLYEMDAIKKAIASLDPAYRPLVTFVVVQKRHHTRLFPEVHGRQDLTDRSGNVRPGTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQPPAVRRLPQIKENVKDVMFYC"
misc_feature 87..467 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /note="propagated from UniProtKB/Swiss-Prot (Q6Z4F1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 594..668 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /note="propagated from UniProtKB/Swiss-Prot (Q6Z4F1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 660..3242 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" exon 765..961 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 962..1102 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1103..1233 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1234..1361 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1362..1465 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1466..1598 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1599..1715 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1716..1823 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1824..1895 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 1896..2015 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2016..2154 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2155..2279 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2280..2408 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2409..2590 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2591..2656 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2657..2720 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2721..2856 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2857..2930 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 2931..3025 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 3026..3057 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" exon 3058..3528 /gene="LOC4342603" /gene_synonym="AGO14; OsAGO14" /inference="alignment:Splign:2.1.0" ORIGIN
atcaaccctctctctctctctctctctgcctcggcgacctcgcctccgcttactctcccacccagacaaaaccctctttgcctctcatggcgtcacgcggcggcgacggcctcgtcggaggagggcgcgggcccctcggtgggcgggacggtagagggcgcggcccggccggtgggcgaggcggcggaaggggaggcggccacccgcagcagcagcagcagcagcagccgggctacggccgcggcgacgggggcggccgtggtcctgcccctgctgctggtggtgtcgttggtcgaggaactggaggcggcggcggcggcgggcgcggggacggcggacgcggccgtggccgtggcggcggcggcggagatggcgttcgccctgctatggccgcggctccggcggcgtcgactcctggtccggttgctgttgctgctcggagtactcctcctcctactcccgcggtccagatccccgcggtggcgtcgtcgtcgtcagcgcagccagcggcggcggcgcagcctcctccggcagccgcggcggtttctgccctcgcgagggacgttgggaggcagctggctgtcgtggcgggcggcggccgccccgctccccccgcggcgccgccggcgcccatcccggtgtcgagcaagggcgtcgcgccaccgtcgcggccggggttcgggacggtgggggagaggatcgtggtgcgcgcgaaccatttcctcgtccgcgtctccgacaacgacatgatctacctctacgacgtgagtttgagtcccccaccaaagaccaggcgcatcaacagggtagtgatgtctgagctggccaggttgcaccgtgagtcgcatctcggtggcataagcttcgcgtacgacggaagcaaggccctgtacactgcaggaaaactgccgttcgactccatggacttcaagatcaagctgggcaaagagctcagggaaatcgagtacaaggtgacaattcgacgtgctggccaagcagatctgcaccacctgcacgagttcatcgccggccggcagagggactctcagcagcaaacgatccaagcactggacgttgtactgagggagtcaccttctctgaactatgtcatcgtttctcggtcgttctactccactatgttcggccgacaagacattggtgatgggctggaatgctggaaaggatactatcagagcctgcgcccaactcagatgggactctcattgaacatagacatatcctctaccccattcttcaaacctatcagcgtggtagaatatgtcaagaattgtctgggcacacctactaatgctaatggccctgaccctaggcggcctctttctgacattgatcgcctgaaggttaagaaagcactacggggagttcgtgttgaaacaacacaccaggggaagagcagcaagtacaagatcactacgattacatctgagccactgagtcagctgaacttttctatggatggaactacccagactgttattcagtacttctcgcagcggtacaaatacaggctgcagtacacgtcttggccctgtctgcaatccggcaacccttctaaccctatatatttgccaatggaggtatgcaccattgtagaagggcaaagatactccaagaagctcaatgacaaacaagtgactggcctcctgagagcaacatgccagcctccccagaaaagggagcagaaaatcattgagatggttcaacacaacaactacccggctgataaggtggtgagtgattttagaattaatatttccaatcagatggccactatgccagctcgcgtgctgcctgcgcccacgctgagataccatgactctggaaaggagaaaacttgtaatcccagagttgggcaatggaatatgatcaataagaaaatggttggtggagctgtggttcaaaagtggacttgcgtgaatttttcacgcatgcatattgatgccgtgcacagactatgcggcgaactagtttatacatgcaatgctattggcatggttttcaatgaaatgccagagatagaggtggggtcagctgctcctaataacatcgaagctgccctgagcaacattcacacaagggctcctcaactccagctgctcattgtgattctcccagatgttaatgggtattatggaagaattaagagggtgtgtgagactgaacttgggatagtatcccagtgcctcaagccaggccgcaagctcttgagcttagacaggcagttcctggaaaatgtctcactcaaaatcaatgtcaaggctggaggacgcaactcagttcttcagagacctcttgtacccggtgggcttgaaaacacaacaataatttttggtgccgatgtcacccatcctgcttctggagaggactcatcggcgtcgatcgcagctgtggtggcctccatggactggcctgagatcaccaagtacaaagccctcgtctctgcccagccacctcggcaggagattatacaagatctcttcaccatgactgaagttgcgcagaatgctgatgctccagcacagaaggctgaaggttcgaagaagaatttcatatgcggcggaatgttcagggagttgcttatgtcattctacagtaagaatgctaaacgtaagcctcaaaggataatattttacagggatggtgtaagtgatggacaattccttcatgttctgctctatgagatggacgcaatcaagaaggctattgcatctttggacccagcatacaggcccctggtgacatttgtggttgtccagaagaggcaccacacaaggctcttccctgaggtgcatggaaggcaagatctgacggacagaagtggaaatgttcgtccaggaaccgtggttgacactaacatttgccaccctagtgagttcgacttctacctgtgcagccatgccggaatccagggaacaagcagaccaacccactaccacgttctccatgacgagaaccgttttagtgccgatcagctgcagatgctcacttacaatttgtgttacacctacgctcgatgcacccggtctgtctctgttgtccctccagcctactacgctcacctggcagcattccgggcgaggtactacgatgagccccccgccatggacggagcttcgtcggtcggcagcggcggcaaccaggcggcggccggcggccagccaccggcggtgcgccgcctcccgcagatcaaggagaacgtcaaggacgtgatgttctactgctgatcgaatcggcgcctagcttgggttttaactacaaacattttgttggtcgctcgtcagtattcattcaggctgttagtgtactgtgctatctctgaaattgtgatggtgtcatttgggacatgttaacctgttgttgaacttgtgatctgtgatgttgatgcagctgctactcgatagttgtatgtttctcgaagtgtatttttttggggttatgtgtgatgtttgaaagacaggtcatgatctaaattatttctgcggattagttgacatgccatgatctaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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