LOCUS       NM_001421692            1272 bp    mRNA    linear   PLN 29-MAY-2023
DEFINITION  Oryza sativa Japonica Group MADS-box transcription factor 30-like
            (LOC4341786), transcript variant 1, mRNA.
ACCESSION   NM_001421692
VERSION     NM_001421692.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Schilling S, Gramzow L, Lobbes D, Kirbis A, Weilandt L, Hoffmeier
            A, Junker A, Weigelt-Fischer K, Klukas C, Wu F, Meng Z, Altmann T
            and Theissen G.
  TITLE     Non-canonical structure, function and phylogeny of the Bsister
            MADS-box gene OsMADS30 of rice (Oryza sativa)
  JOURNAL   Plant J 84 (6), 1059-1072 (2015)
   PUBMED   26473514
  REMARK    GeneRIF: It was concluded that sequence deviations that accumulated
            led to MADS30 and the alteration of the C-terminal domain might
            have been a precondition for a potential neo-functionalization of
            OsMADS30 in O. sativa.
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Lee S, Kim J, Son JS, Nam J, Jeong DH, Lee K, Jang S, Yoo J, Lee J,
            Lee DY, Kang HG and An G.
  TITLE     Systematic reverse genetic screening of T-DNA tagged genes in rice
            for functional genomic analyses: MADS-box genes as a test case
  JOURNAL   Plant Cell Physiol 44 (12), 1403-1411 (2003)
   PUBMED   14701936
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014962.1, CF322128.1, AY174093.1, CI138112.1 and CI259303.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY174093.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN07124405 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AP014962.1         27637542-27637715
            175-226             CF322128.1         182-233
            227-229             AP014962.1         27637854-27637856
            230-810             AY174093.1         10-590
            811-1205            CI138112.1         291-685
            1206-1272           CI259303.1         635-701
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..1272
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="MADS-box transcription factor 30-like"
                     /db_xref="GeneID:4341786"
     exon            1..201
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    170..172
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="upstream in-frame stop codon"
     exon            202..408
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..886
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="P0637D03.37; Os06g0667266; LOC_Os06g45650"
                     /codon_start=1
                     /product="MADS-box transcription factor 30"
                     /protein_id="NP_001408621.1"
                     /db_xref="GeneID:4341786"
                     /translation="

MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKILLLNVITIMILAAMISITHARIALDDCMQLGYIVIKQENSWRFWFI"

     misc_feature    224..436
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="MEF2 (myocyte enhancer factor 2)-like/Type II
                     subfamily of MADS (MCM1, Agamous, Deficiens, and SRF
                     (serum response factor) box family of eukaryotic
                     transcriptional regulators. Binds DNA and exists as hetero
                     and homo-dimers. Differs from SRF-like/Type I...; Region:
                     MADS_MEF2_like; cd00265"
                     /db_xref="CDD:238165"
     misc_feature    order(224..232,236..238,242..244,257..259,263..265,
                     275..280,287..292,296..301,308..313,317..322,332..334)
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238165"
     misc_feature    order(281..283,302..307,314..319,323..328,335..337,
                     350..352,356..358,362..364,380..382,386..388,404..406,
                     419..424,431..433)
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238165"
     misc_feature    395..397
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="putative phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:238165"
     misc_feature    482..736
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="K-box region; Region: K-box; pfam01486"
                     /db_xref="CDD:426286"
     exon            409..484
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            485..649
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            650..691
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            692..754
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            755..845
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            846..1272
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gctcctctccttcagctcgaaggaagccgttccagtgtctcacaagccaaggtaaagaaaaaaaagagagagaaaaaaacagagaaggaaatcaagagaagaacaccatttgattctcctctctgctcactccttctccttcttctgtttgtccgtcttggattggagctagcacttctttgactgcccttgttcatcgaggcggcgaggcgaggtcgcgatggggcaagggaagatcgagatgaagaggatcgaggacgcgacgaggcggcaggtgacgttcagcaagcgcagggctgggtttctcaagaaggcgaacgagctcgccgtgctgtgcgatgcgcaggtcggcgtcgtcgtcttctccgacaagggcaagctcttcgacttctgcagcccgccggtcatcttgatggagctgtttcaccgttatgagatcaccaccagaaacactcggcttcaggagacaaaccgtgatgatgagcaaatggtcatggagatcacaaggctaaggaatgagatcgaccagctcgaagccagtttaaggaggcaaactggagaagacctgtcatctgtgtccacagtggatgagctcagccagctgcagctgcagcttgaatcatctctcagcaaagttcatgcgaggaaggatgagctcatgagccagcagctggaggatatgcgtcgcatgcatcagaccgtgcatgagcagaacaatttcttgtgccgcatggtaactaaaatactcctactaaatgtgatcacaataatgatacttgctgccatgatttctatcactcatgcacgcattgcccttgatgattgtatgcagttgggatatattgtcatcaagcaagaaaattcttggcgattctggtttatatgacttcctggaagcagtaggaacaacaagagttactgaaccagaaattgaacttgccttcttcatgcatcagatgaaccataaagggaacaacactactaccctctccaaaattgagctgctcaggacttcgtagaaatttacagcttcaggacatgtgatttatccattctcttttactgtttattctaaaatgcaaaaaaaaaagaaattttgttgtagcttagattaaggcagcctcagctttgtggtttgccaagccatgtactgatatatgaatgtgatactttaattaatgttgaaacgcatgattatgtatttgaactgaattgactgaatgtgtcctggaatcggtttagaacttaatatatcaatcagacttttgttct

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