LOCUS       NM_001421374            3480 bp    mRNA    linear   PLN 18-MAY-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC8-like (LOC4340445), mRNA.
ACCESSION   NM_001421374 XM_015786612
VERSION     NM_001421374.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014962.1 and AB101651.1.
            
            On May 18, 2023 this sequence version replaced XM_015786612.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00008650, SAMN02298005
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-623               AP014962.1         5502370-5502992     c
            624-1010            AB101651.1         1-387
            1011-1448           AP014962.1         5501156-5501593     c
            1449-1547           AP014962.1         5500984-5501082     c
            1548-1760           AP014962.1         5500669-5500881     c
            1761-1938           AP014962.1         5500406-5500583     c
            1939-2201           AP014962.1         5500045-5500307     c
            2202-2291           AP014962.1         5499883-5499972     c
            2292-3480           AP014962.1         5498576-5499764     c
FEATURES             Location/Qualifiers
     source          1..3480
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..3480
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="homeobox-leucine zipper protein ROC8-like"
                     /db_xref="GeneID:4340445"
     exon            1..676
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    393..395
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="upstream in-frame stop codon"
     CDS             582..2714
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="P0664C05.15; putative homeobox; GL2-type
                     homeodomain protein; Os06g0207966; GLABRA 2-like homeobox
                     protein 8; HD-ZIP protein ROC8; Homeodomain transcription
                     factor ROC8; LOC_Os06g10600; Protein RICE OUTERMOST
                     CELL-SPECIFIC 8"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC8"
                     /protein_id="NP_001408303.1"
                     /db_xref="GeneID:4340445"
                     /translation="

MDFGDEPEGSDSQRRRKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAIREALKNVICPTCGGPPVGEDYFDEQKLRMENARLKEELDRVSNLTSKYLGRPFTQLPPATPPMTVSSLDLSVGGMGGPSLDLDLLSGGSSGIPFQLPAPVSDMERPMMAEMATRAMDELIRLAQAGDHIWSKSPGGGVSGGDARETLNVDTYDSIFSKPGGSYRAPSINVEGSRESGLVLMSAVALADVFMDTNKWMEFFPSIVSKAHTIDVLVNGMGGRSESLILMYEELHIMTPAVPTREVNFVRYCRQIEQGLWAIADVSVDLQRDAHFGAPPPRSRRLPSGCLIADMANGYSKVTWVEHMEVEEKSPINVLYRDLVLSGAAFGAHRWLAALQRACERYASLVALGVPHHIAGVTPEGKRSMMKLSQRMVNSFCSSLGASQMHQWTTLSGSNEVSVRVTMHRSTDPGQPNGVVLSAATSIWLPVPCDHVFAFVRDENTRSQWDVLSHGNQVQEVSRIPNGSNPGNCISLLRGLNASQNSMLILQESCTDASGSLVVYSPIDIPAANVVMSGEDPSSIPLLPSGFTILPDGRPGSAAGASTSSAGPLAAARGGGGGGAGGGSVVTVAFQILVSSLPSSKLNAESVATVNGLITTTVEQIKAALNCSAHGHHP"

     misc_feature    582..650
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q69T58.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(624..638,645..647,696..698,714..716,753..755,
                     759..764,771..776,780..788,792..797)
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(630..632,642..644,762..764,771..776,783..785)
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    633..794
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1182..1889
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1266..1271,1320..1322,1386..1388,1392..1394,
                     1425..1427,1437..1439,1449..1451,1458..1463,1476..1481,
                     1557..1559,1563..1574,1581..1583,1590..1592,1596..1598,
                     1602..1604,1650..1652,1704..1706,1710..1721,1725..1727,
                     1761..1763,1767..1769,1773..1775,1779..1781,1785..1787,
                     1791..1793,1812..1814,1818..1826,1830..1838,1845..1850,
                     1857..1859)
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     misc_feature    2469..2531
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q69T58.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            677..794
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            795..980
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1448
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1547
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1760
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            1761..1938
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            1939..2201
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            2202..2291
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
     exon            2292..3480
                     /gene="LOC4340445"
                     /gene_synonym="GL2-8; Roc8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cttatttcgcaccggttactactctactgctgctgcttctgctactgcactactactacactcatactctcttctctctcctgttcttgattttctctctcctcctctacgcgaggagaggagctagctagcgcacaccagcggcagcagcaggagaaagattggcacgaacagtccagaaaactagtagtagcagaagaggatacagggagagagatcagataagcgagcgtttctgatgatggagaggagatagagggataagcgcgagcaagattggaatcagcgtggtggtggtaggggaggggatggatgatatggcgtgacggaagggggggtttggattggatgagttgaggtgcctgcaaattccttcctgttttggatcgctgtgagttgggaattcctgtataaatacggccccgagaggggacgcagagatcaagaacagtgcaaagatcaatcgatccatccatctctccccctcctcctgctgctgctgttgttgcgagagagagagagagagagagagagagagagagagagaggaagaggcagaggtagtagcagcggcggcggccatggatttcggcgacgaacccgagggctccgacagccagcgccgccgcaagcgctaccaccgccacacgcctcgccagattcagcagctcgaggcgatgttcaaggagtgcccccacccggacgagaaccagcgggcgcagcttagccgggagctcgggttggagccgaggcagatcaagttctggttccagaatcgccggacccagatgaaggcgcagcacgagcgggcggacaactgcttcctccgcgccgagaacgacaagatccggtgcgagaacatcgccatccgcgaggccctcaagaacgtcatctgccccacctgcggcggccctcccgtcggcgaggactacttcgacgagcagaagcttcgcatggagaacgcccgcctcaaggaagagctggaccgcgtgtcgaacctgacgtcgaagtatctcggccggccgttcacgcagctgccgccggcgacgccgccgatgacggtgtcgtcgctggacctgtccgtgggcgggatgggcgggccgtcgctggacctggacctcctcagcggtggctcgtcggggatcccgttccagctgccggcgcccgtgtccgacatggagcggcccatgatggccgagatggccacgcgcgccatggacgagctgatccgcctcgcgcaggccggcgaccacatctggtccaagagccccggcggcggcgtgtccggcggcgacgcccgcgagaccctcaacgtcgacacctacgacagcatcttctccaagcccggcggctcgtaccgcgcccccagcatcaacgtcgaggggtcccgcgagtccggcctcgtgctcatgagcgccgtcgccctcgccgacgtgttcatggacacgaacaagtggatggagttcttcccaagcatcgtgtccaaagctcacaccattgatgtgctcgtgaatggcatgggagggagaagcgagtccttgattctgatgtacgaggagctgcacatcatgacgccggccgtcccgacccgggaggtgaacttcgtccgctactgccggcagatcgagcaggggctatgggccatcgccgacgtctccgtcgacctgcagcgcgacgcccacttcggcgcgccgccgccgcgctcccgccggctcccttcggggtgcctcatcgctgacatggccaatggctactccaaggtgacctgggtcgaacacatggaggtggaggagaagagcccgatcaacgtgctgtaccgtgacctcgtgctgagcggcgccgcgttcggggcgcaccgctggctcgccgcgctccagcgcgcgtgcgagcgctacgcctccctcgtcgcgctcggcgtcccgcaccacatcgccggtgtgacgccggaggggaagaggagcatgatgaagctgtcgcagcggatggtgaacagcttctgctcgagcctgggggcgtcgcagatgcaccagtggacgacgctgtcgggctccaacgaggtgagcgtccgcgtcaccatgcaccggagcacggaccccggccagcccaacggcgtcgtcctcagcgccgccacctccatctggctccccgtcccctgcgaccacgtcttcgccttcgtccgcgacgagaacacccgctcccagtgggacgtcctgtcgcacggcaatcaagtccaggaagtgtcgcgcatccccaacggctcaaacccggggaactgcatctcgctgctaagaggcttgaatgcgagccagaacagcatgctgatactgcaggagagctgcacggacgcgtcggggtcgctggtggtgtactcgccgatcgacatcccggcggcgaacgtcgtgatgagcggtgaggacccgtcgagcatcccgctgctgccgtcggggttcaccatcctccccgatggccgcccgggctcggcggcgggggcgtcgaccagcagcgcggggccgctcgccgccgcgcgcggcgggggcggcgggggcgctggcggcgggtccgtcgtcaccgtcgcgttccagatcctcgtcagcagcctgccgtcgtcgaagctcaacgccgagtctgtcgccaccgtcaacgggctgatcaccaccaccgtcgagcagatcaaggccgcgctcaactgctccgcccatggccaccacccctgatcgccgccgccgccgccaccgagctcgccattgcattgcacccgcttcgccatcatcggaggagagagagttggttggcgcgttgaatgctcgcattcatggactccacctgctgctgctgctgctgctgcatctgaagctgatgcaactctctctctatctatctctctctttcgcccatccattatccagctagccatgatccatccatcaaaccatgcatcgttaaaaaaaaataactcttgtttaggttttcgttgcatttttgcatatctttttttttctttctcctctctcatcagattgcaggaatttcattcgggttttttttatttttttttcattttcgatcgctcttaggcatttatgcaagtcagtcaatcaatcagttttcaggacatcaccaatcaaccaatcaacagaaggctttcagaacgagggagtcaagaacgcaccatgcttgtcacttttcctcttgttgtaaccaccaaatcacacaccaccaccatcacaaaccacaaattttcttttcctctttctttttcacccattggatttgttccgttttgatcatatcatcatccatgcatcatcatccatccatccatatgcatccttgtcacctcgcgcgttgtcgctggtgttgtagcagcagaggatgaatggttcgggtattgacttctgtccattaatgtaaagccttcaatgaacattcatttcggttataaatggaaagagaaaaaaacaaacagagagtgctggtaaa

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