LOCUS       NM_001421067            1395 bp    mRNA    linear   PLN 10-MAY-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX2-like (LOC4340070), mRNA.
ACCESSION   NM_001421067 XM_015786353
VERSION     NM_001421067.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI295463.1, AK105150.1 and CI136537.1.
            
            On May 10, 2023 this sequence version replaced XM_015786353.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK105150.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               CI295463.1         1-222
            223-1056            AK105150.1         223-1056
            1057-1395           CI136537.1         82-420
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..1395
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="homeobox-leucine zipper protein HOX2-like"
                     /db_xref="GeneID:4340070"
     exon            1..469
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..979
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="OSJNBa0041F13.48; homeodomain leucine zipper
                     protein; HD-ZIP protein HOX2; Homeodomain transcription
                     factor HOX2; LOC_Os06g04870"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX2"
                     /protein_id="NP_001407996.1"
                     /db_xref="GeneID:4340070"
                     /translation="

MMDLGLSLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASGKRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAVAGGNVLPSHCQFFPAAAAAADRTSQSTWNAAAPLVTRELF"

     misc_feature    95..160
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    263..403
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(392..403,407..409,458..460,476..478,515..517,
                     521..526,533..538,542..550,554..559)
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(395..397,404..406,524..526,533..538,545..547)
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    404..556
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    560..694
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1);
                     Region: Leucine-zipper"
     misc_feature    560..>664
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     cl23880"
                     /db_xref="CDD:451592"
     exon            470..1395
                     /gene="LOC4340070"
                     /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atctcctccacctcctccacctcgccgccatttgatcgaacacctgatagccatgatggatctcggcctcagcctcggcctcggcctcgcctcgcagggcagcctcacctcctccaccaccaccacctcctcccccggcgccggatcatcctccccgtgggccgccgcgctcaactccatcgtcggcgacgtgaggcgggatcaggccgcggcgcatgctgccgcggcggtgggggttggggttgggggcgaggagatgtaccaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcgggaagagggagagggagctggagcggtcgggatccggggttgacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggaccaggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaaggtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaaccggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtggtgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcgctcaaggccgcgccctcgccggcgtccgcgtccgcgatgcagccctcctcctccgccgccgccacgctcaccatgtgcccctcctgccgccgcgtcgccaccgccggcgcgccgcaccagcctaaccaccaacaatgccatcccaaatctaacaccaccatctcctcctcctccaccgccgccgccgccgtcgccgtcgccggcggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccggacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttctagaaacaatccatccatcgccatgacaaacttgggaaaggatcaagctttgattggtcaagacagtgtttttaccaggtggtgatttggttaattaattaattataattaatcactcaagaggaggggattaattgccttgatttggtacctaattactagtatgattagcagtagtagtagtagcagcaaatttggtttggattaattcagtttgattccatgatatgaacaaaggaacaaagcaacaaaaaaatggccgtctgctttttcttggacggcattcttatatgtaccaattcaccaaatctgctggttggtggattaacagcttgataattggtatattgattgtactactaccactaattgattgaattatgagaaaagttaatgaaatcttttctaattcttcagca

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