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2024-04-29 22:00:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001420218            1895 bp    mRNA    linear   PLN 27-APR-2023
DEFINITION  Oryza sativa Japonica Group acyl transferase 7-like (LOC4337975),
            mRNA.
ACCESSION   NM_001420218 XM_015781965
VERSION     NM_001420218.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK100028.1.
            
            On Apr 27, 2023 this sequence version replaced XM_015781965.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK100028.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1895              AK100028.1         2-1896
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="5"
                     /map="5"
     gene            1..1895
                     /gene="LOC4337975"
                     /gene_synonym="AT7; OsAT7"
                     /note="acyl transferase 7-like"
                     /db_xref="GeneID:4337975"
     exon            1..563
                     /gene="LOC4337975"
                     /gene_synonym="AT7; OsAT7"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1406
                     /gene="LOC4337975"
                     /gene_synonym="AT7; OsAT7"
                     /EC_number="2.3.1.-"
                     /note="LOC_Os05g08640"
                     /codon_start=1
                     /product="acyl transferase 7"
                     /protein_id="NP_001407147.1"
                     /db_xref="GeneID:4337975"
                     /translation="
MAAAAPDKAVERLSQKLVHPSSPTPSAPLRLSWLDRYPTQMALIESLHVFKPDPARDAAGQGLAPARAIETALARALVEYYPLAGRLAVSRDSGELQVDCCGGAGGHGGVWFIEAAVPCRLEDVDYLEYPLAISKDELLPHPRPRPTRDEEDKLILLVQVTTFACGGFVVGFRFSHAVADGPGAAQFMGAVGELARGGERITVAPSWGRDAVPDPAGAMVGALPEPAGASRLEYLAIDISADYINHFKSQFAAATGGARCSAFEVLIAKAWQSRTRAAAFDPSTPINLSFAMNARPLLLPRGGAGFYGNCYYIMRVASTAGRVATASVTDVVRMIREGKKRLPSEFARWAAGEMAGVDPYQITSDYRTLLVSDWTRLGFAEVDYGWGPPGHVVPLTNLDYIATCILVKPWAHKPGARLITQCVTPDRVTAFHDAMVDIN"
     misc_feature    87..161
                     /gene="LOC4337975"
                     /gene_synonym="AT7; OsAT7"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0DKA5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            564..1895
                     /gene="LOC4337975"
                     /gene_synonym="AT7; OsAT7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
attcaattcactcccccctccagcttctcactccccacacgcagcttccagctcatcaccccccacaaccacctcctccccctcccatggcggcggcggcgccggacaaggcggtggagcggctgtcccagaagctggtgcacccgtcgtcccccacgccgtcggccccgctccgcctctcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaagcccgacccggcgagggacgccgcggggcaggggctcgcccccgcgcgcgccatcgagacggccctcgcgagagccctcgtcgagtactacccgctcgccgggaggctcgccgtctcccgggactccggcgagctccaggtggattgctgcggcggcgccggcggccatggcggggtgtggttcatcgaggcggctgtcccgtgccggctcgaggacgtggattacctcgagtaccctctcgccatctccaaggacgagctgctcccccacccgcgcccccgccccacccgcgacgaggaagacaagctcatcctgctcgtccaggtgacgacgttcgcgtgcggcgggttcgtggtggggttcaggttcagccacgcggtggcggacggcccgggggcggcgcagttcatgggcgcggtcggcgagctcgcccgcggcggcgagcgcatcacggtggccccgtcgtgggggcgcgacgcggtgcccgacccggccggcgccatggtcggcgccctcccggagccggccggcgcgtcccgcctcgagtacctcgccatcgacatctccgccgactacatcaaccacttcaagtcccagttcgcggcggccaccggcggcgcccgctgctccgccttcgaggtgctcatcgccaaggcatggcagagccgcacccgcgccgccgcgttcgacccctcgacgccgatcaacctctccttcgccatgaacgcccggccgctcctcctcccgcgcggcggcgccgggttctacggcaactgctactacatcatgcgggtggcctccaccgccgggagggtggcgacggcgagcgtcaccgacgtggtgaggatgatccgggaggggaagaagcggctcccgtcggagttcgcgcggtgggccgccggagagatggccggagtcgacccgtaccagatcacctccgactaccggacgctgctggtctccgactggacgcggctgggcttcgccgaggtggactacgggtggggcccaccgggccacgtcgtgccgctcacgaacctggactacatcgccacgtgtatcctcgtcaagccctgggcccacaaaccaggggcacggctcatcacccagtgcgtcacacccgaccgcgtcaccgccttccacgacgccatggtggacatcaactaatttattattataattataattattattattattattattcccttttctttttattttattttttttaccacgccacctttttcactttgtttttttaccactacttccttataattaattaattaattaattagatattaataatgaagaattaagggtaaaaaaaggagaggataaagaaaggtgaaaagtacatattgatattgagggtacaggtagatggtagtagttgttggcattattagtgggattggtattggattcctttggtgttgtttggtcaagtgtatactggagaacagctactacatgctgggtattccttttatttttttttcttttttttgggatcaaaagctggaattggtgggaagccaccaactaaccagtatgtcccccttgataagtgtaccatatattgtattcaatttttatcttattttcagaatggtatatataagctggcaaggtgtacagcctctttagttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]