LOCUS       NM_001419866            3356 bp    mRNA    linear   PLN 19-FEB-2024
DEFINITION  Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992),
            mRNA.
ACCESSION   NM_001419866 XM_015780526
VERSION     NM_001419866.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3356)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014960.1.
            
            On Apr 20, 2023 this sequence version replaced XM_015780526.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN02716060,
                              SAMN02716063 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               AP014960.1         31244758-31244966
            210-1425            AP014960.1         31246144-31247359
            1426-3356           AP014960.1         31247840-31249770
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3356
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="protein argonaute 3-like"
                     /db_xref="GeneID:4336992"
     exon            1..209
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..3022
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="LOC_Os04g52550; OSJNBa0008M17.12"
                     /codon_start=1
                     /product="protein argonaute 3"
                     /protein_id="NP_001406795.1"
                     /db_xref="GeneID:4336992"
                     /translation="

MAPARPPRPARPPEPASPPPPPPPPAPASPPPPPAPAAKGIQDEGSSSSSWSVERIPYGEDEKEEPPATPIASSNKNKREEPPTKHRPMARPPGGGGPLSKGEVKLLVNHFSVDYPKESTFFHYEIRIKLGDGPNRKLSKAELLTVKNELFEHESLQELSSAVAYDGERNLYTCAELPEDCIVPVSKFRVKDSSRTYIVSVKLKKPLPLSQLLEQRPGPRDVMQGLDVIVREASSFGKIVLGQGFYPQSGSEAISDSNIVALKGTQQSLKCTQKGLILCVDYSVLPCWKAGSVLDLVKTMKFMEYPLLEDQLKKLNNALKGLCVTVSHRKTEEKYTVKGLTDKPADQITFKDSKSGQTTKLIEYYKETYKKEIEHPMLPCLDLSKSKSKQNYVPIEFCNIPEGERYPVARLDDKKSDNKGEQEKPSTKTTLRKISIKVASSRKEEILDLVGNAQDGPCRGKIAQRFRISLDAAMMEVTGRILAPPTLELGTGTSRGQTFKFTIHQDDCQWNWKLKKYDKRVVAHGGTLNCWGVVDFSEGDLESKFIDKVVRKCSALGMVMTRKPCYEHVSNMEVLSDPKSLRDALIEAKRAAEEEDKKLQLLFCPMLNRCHGYKTLKLMCETELGIQTQCFLSTAAKLDEKRQDQYITNLALKINGKIGGSNMQLDPDSIPVVSAKDFMFIGADVNHPPPGNVSKDIPSIAAVVASVDKGASKYVTRIRAQYHRCEMIQNLGDICKELIGAYEKVNKKKPDSIIYFRDGVSDGQFDMVLNEELADMENKIMVGDYPKITVIVAKKRHHTRLFPKDRNQRQTKNGNVLPGTVVDTDVVDPTAYDFYLCSHKGEVGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYEGMMMLQPAASAASASEAMMPAAQPQAAAAAAAAASPSSSAASSSEGMTASQPQAPAAEAASSSAGAADFRELPPMHGDLLNNMFFL"

     misc_feature    545..739
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    773..916
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    917..1249
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1052..1054,1097..1099,1130..1132,1142..1144,
                     1199..1201,1220..1222,1226..1228)
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1430..2758
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1886..1888,1898..1900,1934..1945,1958..1960,
                     1985..1987,1994..1996,2006..2008,2018..2020)
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2099..2101,2105..2107,2321..2323,2726..2728)
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            210..1425
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /inference="alignment:Splign:2.1.0"
     exon            1426..3356
                     /gene="LOC4336992"
                     /gene_synonym="AGO3; OsAGO3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgacttcccggagttggggattggggggacgcccgtgctcgttcggcgatggcgcccgcgcgaccaccgagaccagcacgaccaccagagccagcgtcaccaccaccgccaccaccaccaccagcgccagcgtcaccaccaccaccaccagcgccagcagcgaaggggatccaggacgagggatcctcgagttcgtcgtggtccgttgagcgcattccctacggtgaggatgaaaaagaagaaccaccggcaaccccaattgcttccagtaacaagaataaaagagaagaaccacctaccaaacataggccaatggcaagaccacctggtggtggaggtccattatctaaaggcgaggtcaaattgttggtgaaccatttttcagtcgactacccaaaggaatcaaccttttttcactatgaaatacgaatcaagcttggtgacggtcccaacagaaagctctcaaaggcagagcttcttacagtcaagaatgagctcttcgagcacgagagccttcaggagctttcgtcagctgttgcttatgatggagagagaaatttatacacttgtgctgaactaccagaagactgcatagtccctgtgagcaaattccgtgtgaaggacagttcacggacctacattgtatcagtgaagttgaagaagccgctgcctttaagccaactcttggagcagcggcctgggcctagagatgtcatgcagggccttgatgtcattgtgcgtgaggcatctagcttcggcaagattgtccttggtcagggattttacccgcagagcggcagtgaggccatcagtgatagcaatattgtagctctcaaaggaacccagcagagccttaaatgcactcagaaagggctgatcctgtgtgtggactattcggttttgccatgttggaaagctggatctgtgttggaccttgttaagactatgaagttcatggaatacccgctcttggaagaccaattgaaaaaattgaacaatgcgctcaaaggcctgtgtgttactgtaagtcacaggaagactgaggagaagtacactgttaaaggcttgacagataaacctgccgaccagataacttttaaagactctaaatcaggacagacgacgaagcttatcgagtactataaggagacgtataagaaagagattgagcatccgatgcttccatgcttggatttgagcaagagcaagtccaaacaaaactatgtgccgattgaattttgtaatattcctgaaggggagaggtatccagtggcgaggttagatgacaagaagtctgataataagggcgaacaagagaagccatctacaaagacgacactgagaaaaatttctataaaggttgcctctagtcggaaggaggagattctggacttggtggggaatgctcaagatgggccttgcaggggaaaaatagctcagcgattcaggatttctttagatgcagcaatgatggaagtcactggtaggattcttgctccccccaccctagaacttggcactggcacctccagaggccagaccttcaaattcactattcatcaggatgactgccagtggaactggaagcttaaaaaatacgataaacgagtagtagcacatggcgggactcttaactgctggggcgtcgtcgatttcagtgaaggcgacctagagagcaagtttattgacaaggttgtcaggaagtgctccgcccttggcatggtcatgacccgtaaaccatgctatgagcatgtgtcaaatatggaagtgctatccgatccaaagagcctcagagatgcgcttatcgaagcgaagcgtgccgcggaggaggaagacaagaagctgcagctcctcttctgcccgatgctcaaccggtgccatgggtacaagaccctgaagttgatgtgcgagacggagctggggatccagacccagtgcttcttgagcaccgccgcaaaactcgacgaaaaacgacaggaccagtacattaccaaccttgctctgaagatcaacggcaagatcgggggtagcaacatgcagctcgacccggactcgatcccagtggtgtccgccaaggatttcatgttcatcggtgcggacgtgaaccaccctccgcctgggaatgtcagtaaggacatcccgtccatagcagccgtggtggcctccgttgataaaggcgccagcaagtacgtgacaaggatccgcgcccagtatcaccggtgcgagatgatccagaacctcggtgatatctgcaaggagctcatcggcgcgtatgagaaggtaaacaagaagaagcctgatagcatcatctacttccgcgacggcgtcagtgacggtcagttcgacatggtgctgaacgaggagctggcggacatggagaataagatcatggtgggtgactacccgaagatcaccgtgatcgttgccaagaagaggcaccacacgcggctgttccccaaggacaggaaccagcggcagaccaagaacggcaacgtgctccccggcacggtggtggacaccgacgtggtcgacccgacggcgtacgacttctacctgtgcagccacaagggggaggtcgggacgagccggccgacgcactactacagccttctggacgagcacggcttcgcctccgacgacctgcagaagctggtgtacaacctctgcttcgtcttcgcccgctgcaccaagccggtgtcgctggccactcccgtctactacgccgacctcgccgcctaccgcggcaggctctactacgagggcatgatgatgttgcagccggcggcgtcagcggcatctgcctccgaggccatgatgccggcggcacagccccaggcggctgcggctgcggctgcggcagcgtcgccgtcgtcgtcagcggcatcctcatctgagggcatgacggcgtcccagccccaggcgccggcggcggaggcggcatcctcctccgcgggagctgccgacttcagggagttgcctccgatgcacggggatctgttgaacaacatgttcttcctctgacgacagcttttcgccgcatatggtctctcgttgccaggtactcctcgtatggtcctggaacttgcgtttgattttctggttgtgatacctgtccgtgtcccggtgtctgttctttaactgcctggagtctctcatgtctttgggtggtttatccatagtaaatttttgtccgtgtcatatcttttgcagtcctatacatgctgtcgggctgcatggttgcacaataaaagtttcttcttttgcaatcttcattattttgatgtgcgaacagtaaaatgtatggtccattgccaaagttgctcagctcagtccagtacaccaatttttcactgaa

//