2024-04-29 16:57:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001419866 3356 bp mRNA linear PLN 20-APR-2023 DEFINITION Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. ACCESSION NM_001419866 XM_015780526 VERSION NM_001419866.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3356) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AP014960.1. On Apr 20, 2023 this sequence version replaced XM_015780526.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02716060, SAMN02716063 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-209 AP014960.1 31244758-31244966 210-1425 AP014960.1 31246144-31247359 1426-3356 AP014960.1 31247840-31249770 FEATURES Location/Qualifiers source 1..3356 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..3356 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="protein argonaute 3-like" /db_xref="GeneID:4336992" exon 1..209 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /inference="alignment:Splign:2.1.0" CDS 50..3022 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="LOC_Os04g52550; OSJNBa0008M17.12" /codon_start=1 /product="protein argonaute 3" /protein_id="NP_001406795.1" /db_xref="GeneID:4336992" /translation="
MAPARPPRPARPPEPASPPPPPPPPAPASPPPPPAPAAKGIQDEGSSSSSWSVERIPYGEDEKEEPPATPIASSNKNKREEPPTKHRPMARPPGGGGPLSKGEVKLLVNHFSVDYPKESTFFHYEIRIKLGDGPNRKLSKAELLTVKNELFEHESLQELSSAVAYDGERNLYTCAELPEDCIVPVSKFRVKDSSRTYIVSVKLKKPLPLSQLLEQRPGPRDVMQGLDVIVREASSFGKIVLGQGFYPQSGSEAISDSNIVALKGTQQSLKCTQKGLILCVDYSVLPCWKAGSVLDLVKTMKFMEYPLLEDQLKKLNNALKGLCVTVSHRKTEEKYTVKGLTDKPADQITFKDSKSGQTTKLIEYYKETYKKEIEHPMLPCLDLSKSKSKQNYVPIEFCNIPEGERYPVARLDDKKSDNKGEQEKPSTKTTLRKISIKVASSRKEEILDLVGNAQDGPCRGKIAQRFRISLDAAMMEVTGRILAPPTLELGTGTSRGQTFKFTIHQDDCQWNWKLKKYDKRVVAHGGTLNCWGVVDFSEGDLESKFIDKVVRKCSALGMVMTRKPCYEHVSNMEVLSDPKSLRDALIEAKRAAEEEDKKLQLLFCPMLNRCHGYKTLKLMCETELGIQTQCFLSTAAKLDEKRQDQYITNLALKINGKIGGSNMQLDPDSIPVVSAKDFMFIGADVNHPPPGNVSKDIPSIAAVVASVDKGASKYVTRIRAQYHRCEMIQNLGDICKELIGAYEKVNKKKPDSIIYFRDGVSDGQFDMVLNEELADMENKIMVGDYPKITVIVAKKRHHTRLFPKDRNQRQTKNGNVLPGTVVDTDVVDPTAYDFYLCSHKGEVGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYEGMMMLQPAASAASASEAMMPAAQPQAAAAAAAAASPSSSAASSSEGMTASQPQAPAAEAASSSAGAADFRELPPMHGDLLNNMFFL"
exon 210..1425 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /inference="alignment:Splign:2.1.0" exon 1426..3356 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /inference="alignment:Splign:2.1.0" ORIGIN
acgacttcccggagttggggattggggggacgcccgtgctcgttcggcgatggcgcccgcgcgaccaccgagaccagcacgaccaccagagccagcgtcaccaccaccgccaccaccaccaccagcgccagcgtcaccaccaccaccaccagcgccagcagcgaaggggatccaggacgagggatcctcgagttcgtcgtggtccgttgagcgcattccctacggtgaggatgaaaaagaagaaccaccggcaaccccaattgcttccagtaacaagaataaaagagaagaaccacctaccaaacataggccaatggcaagaccacctggtggtggaggtccattatctaaaggcgaggtcaaattgttggtgaaccatttttcagtcgactacccaaaggaatcaaccttttttcactatgaaatacgaatcaagcttggtgacggtcccaacagaaagctctcaaaggcagagcttcttacagtcaagaatgagctcttcgagcacgagagccttcaggagctttcgtcagctgttgcttatgatggagagagaaatttatacacttgtgctgaactaccagaagactgcatagtccctgtgagcaaattccgtgtgaaggacagttcacggacctacattgtatcagtgaagttgaagaagccgctgcctttaagccaactcttggagcagcggcctgggcctagagatgtcatgcagggccttgatgtcattgtgcgtgaggcatctagcttcggcaagattgtccttggtcagggattttacccgcagagcggcagtgaggccatcagtgatagcaatattgtagctctcaaaggaacccagcagagccttaaatgcactcagaaagggctgatcctgtgtgtggactattcggttttgccatgttggaaagctggatctgtgttggaccttgttaagactatgaagttcatggaatacccgctcttggaagaccaattgaaaaaattgaacaatgcgctcaaaggcctgtgtgttactgtaagtcacaggaagactgaggagaagtacactgttaaaggcttgacagataaacctgccgaccagataacttttaaagactctaaatcaggacagacgacgaagcttatcgagtactataaggagacgtataagaaagagattgagcatccgatgcttccatgcttggatttgagcaagagcaagtccaaacaaaactatgtgccgattgaattttgtaatattcctgaaggggagaggtatccagtggcgaggttagatgacaagaagtctgataataagggcgaacaagagaagccatctacaaagacgacactgagaaaaatttctataaaggttgcctctagtcggaaggaggagattctggacttggtggggaatgctcaagatgggccttgcaggggaaaaatagctcagcgattcaggatttctttagatgcagcaatgatggaagtcactggtaggattcttgctccccccaccctagaacttggcactggcacctccagaggccagaccttcaaattcactattcatcaggatgactgccagtggaactggaagcttaaaaaatacgataaacgagtagtagcacatggcgggactcttaactgctggggcgtcgtcgatttcagtgaaggcgacctagagagcaagtttattgacaaggttgtcaggaagtgctccgcccttggcatggtcatgacccgtaaaccatgctatgagcatgtgtcaaatatggaagtgctatccgatccaaagagcctcagagatgcgcttatcgaagcgaagcgtgccgcggaggaggaagacaagaagctgcagctcctcttctgcccgatgctcaaccggtgccatgggtacaagaccctgaagttgatgtgcgagacggagctggggatccagacccagtgcttcttgagcaccgccgcaaaactcgacgaaaaacgacaggaccagtacattaccaaccttgctctgaagatcaacggcaagatcgggggtagcaacatgcagctcgacccggactcgatcccagtggtgtccgccaaggatttcatgttcatcggtgcggacgtgaaccaccctccgcctgggaatgtcagtaaggacatcccgtccatagcagccgtggtggcctccgttgataaaggcgccagcaagtacgtgacaaggatccgcgcccagtatcaccggtgcgagatgatccagaacctcggtgatatctgcaaggagctcatcggcgcgtatgagaaggtaaacaagaagaagcctgatagcatcatctacttccgcgacggcgtcagtgacggtcagttcgacatggtgctgaacgaggagctggcggacatggagaataagatcatggtgggtgactacccgaagatcaccgtgatcgttgccaagaagaggcaccacacgcggctgttccccaaggacaggaaccagcggcagaccaagaacggcaacgtgctccccggcacggtggtggacaccgacgtggtcgacccgacggcgtacgacttctacctgtgcagccacaagggggaggtcgggacgagccggccgacgcactactacagccttctggacgagcacggcttcgcctccgacgacctgcagaagctggtgtacaacctctgcttcgtcttcgcccgctgcaccaagccggtgtcgctggccactcccgtctactacgccgacctcgccgcctaccgcggcaggctctactacgagggcatgatgatgttgcagccggcggcgtcagcggcatctgcctccgaggccatgatgccggcggcacagccccaggcggctgcggctgcggctgcggcagcgtcgccgtcgtcgtcagcggcatcctcatctgagggcatgacggcgtcccagccccaggcgccggcggcggaggcggcatcctcctccgcgggagctgccgacttcagggagttgcctccgatgcacggggatctgttgaacaacatgttcttcctctgacgacagcttttcgccgcatatggtctctcgttgccaggtactcctcgtatggtcctggaacttgcgtttgattttctggttgtgatacctgtccgtgtcccggtgtctgttctttaactgcctggagtctctcatgtctttgggtggtttatccatagtaaatttttgtccgtgtcatatcttttgcagtcctatacatgctgtcgggctgcatggttgcacaataaaagtttcttcttttgcaatcttcattattttgatgtgcgaacagtaaaatgtatggtccattgccaaagttgctcagctcagtccagtacaccaatttttcactgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]