LOCUS       NM_001419865            3478 bp    mRNA    linear   PLN 15-JUL-2024
DEFINITION  Oryza sativa Japonica Group protein argonaute 2-like (LOC4336991),
            mRNA.
ACCESSION   NM_001419865 XM_015780525
VERSION     NM_001419865.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Wang,Z., Chen,D., Sun,F., Guo,W., Wang,W., Li,X., Lan,Y., Du,L.,
            Li,S., Fan,Y., Zhou,Y., Zhao,H. and Zhou,T.
  TITLE     ARGONAUTE 2 increases rice susceptibility to rice black-streaked
            dwarf virus infection by epigenetically regulating HEXOKINASE 1
            expression
  JOURNAL   Mol Plant Pathol 22 (9), 1029-1040 (2021)
   PUBMED   34110094
  REMARK    GeneRIF: ARGONAUTE 2 increases rice susceptibility to rice
            black-streaked dwarf virus infection by epigenetically regulating
            HEXOKINASE 1 expression.
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Yin,W., Xiao,Y., Niu,M., Meng,W., Li,L., Zhang,X., Liu,D.,
            Zhang,G., Qian,Y., Sun,Z., Huang,R., Wang,S., Liu,C.M., Chu,C. and
            Tong,H.
  TITLE     ARGONAUTE2 Enhances Grain Length and Salt Tolerance by Activating
            BIG GRAIN3 to Modulate Cytokinin Distribution in Rice
  JOURNAL   Plant Cell 32 (7), 2292-2306 (2020)
   PUBMED   32409321
  REMARK    GeneRIF: ARGONAUTE2 Enhances Grain Length and Salt Tolerance by
            Activating BIG GRAIN3 to Modulate Cytokinin Distribution in Rice.
REFERENCE   3  (bases 1 to 3478)
  AUTHORS   Zheng,S., Li,J., Ma,L., Wang,H., Zhou,H., Ni,E., Jiang,D., Liu,Z.
            and Zhuang,C.
  TITLE     OsAGO2 controls ROS production and the initiation of tapetal PCD by
            epigenetically regulating OsHXK1 expression in rice anthers
  JOURNAL   Proc Natl Acad Sci U S A 116 (15), 7549-7558 (2019)
   PUBMED   30902896
  REMARK    GeneRIF: These results indicate that OsHXK1 controls the
            appropriate production of ROS and the proper timing of tapetal PCD
            and is directly regulated by OsAGO2 through epigenetic regulation.
REFERENCE   4  (bases 1 to 3478)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK120766.1, CI124694.1 and CI152742.1.
            
            On Apr 20, 2023 this sequence version replaced XM_015780525.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK120766.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00497392, SAMD00497393
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2819              AK120766.1         2-2820
            2820-3382           CI124694.1         102-664
            3383-3478           CI152742.1         455-550
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3478
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="protein argonaute 2-like"
                     /db_xref="GeneID:4336991"
     exon            1..592
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /inference="alignment:Splign:2.1.0"
     CDS             100..3204
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="LOC_Os04g52540; OSJNBa0008M17.11"
                     /codon_start=1
                     /product="protein argonaute 2"
                     /protein_id="NP_001406794.1"
                     /db_xref="GeneID:4336991"
                     /translation="

MEHERGGGGRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGGRGYGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGGGGRGHESGGGGGRGGNVWAQPGRGRGGAPAPAPAPAPAARRIQDEGAARSSGTVERIASTEVVRVQPPAPPVAVSRSGTRVPMRRPDGGGSVSKAKVKLLVNHFIVKYRQASTVFHYDIDIKLDISSPKASDKELSKGDFLTVKDELFKDESFRRLSSAVAYDGKRNLFTCAELPDGLFRVKVRSRTYIVSVEFKKKLPLSQLSELPVPREVLQGLDVIVREASSWRKIIIGQGFYSQGRSVPIGPDVVALKGTQQTLKCTQKGLILCVDYSVMPFRKAGPVLDLVQKSVRYLDYRTTLNKHQLDTLKNELKGQRVTVNHRRTKQKYIVKGLTDKPASQITFVDSESGQTKKLLDYYSQQYGKVIEYQMLPCLDLSKSKDKQNYVPIELCDLLEGQRYPKASLNRNSDKTLKEMALIPASSRKEEILELVNADDGPCRGEIAQQFGISLDVQMMEVTGRTLPPPSLKLGTSSGQPPKFNIDQPNCQWNLTRKRLAEGGVLQCWGVVDFSADSGQYALNGNMFIDKIVRKCCDLGVQMNRNPCIVQLLDMEVLSDPHQLFEELNKAKQAAASKKQKLQLLFCPMSDQHPGYKTLKLICETQLGIQTQCFLSFLANKQQGQDQYMSNLALKINGKIGGSNIQLFGESLPRISGAPYMFIGADVNHPSPGNVESPSIAAVVASVDQGASKYVPRIRAQPHRCEVIQHLGDMCKELIGVFEKRNRVKPQRIIYFRDGVSDGQFDMVLNEELADMEKAIKTKDYSPTITVIVAKKRHHTRLFPKDLNQQQTKNGNVLPGTVVDTGVVDPAAYDFYLCSHNGLIGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYEGMMMSQPPPSSAASASSASSSGAGASDFRSFPALHEDLVDNMFFI"

     misc_feature    100..702
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XTS4.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    916..1089
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    1120..1263
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    1342..1632
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="PAZ domain; Region: PAZ; pfam02170"
                     /db_xref="CDD:460472"
     misc_feature    1747..3063
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2197..2199,2209..2211,2245..2256,2263..2265,
                     2293..2295,2302..2304,2314..2316,2326..2328)
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2407..2409,2413..2415,2623..2625,3031..3033)
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            593..1742
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..3478
                     /gene="LOC4336991"
                     /gene_synonym="AGO2; OsAGO2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcttctgctttttagcgaaatccgagaaaaaaattgcctgcaaaaaaaaaaatcgaaacgtcgttctgatcgatcggccgttcgagttcacggcggagatggagcacgagcgcggtggcggtggccgcggccgcgggaggggtcgcggtggcgggcgtggcggcggtggcggcgatggtcgcggaggcggttatggtggtgctggtggtggtggtgtcggcgggcgcggtgggcgtgggcctcctggtggtggtggtggacgcgggtacgagcccggcggcgggcgtgggtacggtggcggcggcggcggtggtggacgtgggtatggcggcggaggcggcggtggtgggtacgagtccggcggtgggcgtgggtatggcggcggtggacgtgggtatgaatccggcggtgggcgtggacctggcggcggcggccgtgggcacgagtccggcggtggcggtggccgcggcgggaacgtgtgggcgcagccggggagagggcgcggaggagcccccgccccggcgccggcgccagcaccagcagcgaggaggatccaggacgagggggccgcgaggtcgtcgggtaccgttgagcgcattgcttctactgaggttgtaagagtacaaccacctgcacccccagttgctgtgtctcgtagtggcacgcgtgtgccaatgcgaagacctgatggtggaggctcagtatcgaaagccaaggtcaaattgttggtgaaccattttatagttaagtaccgacaggcatcaactgtttttcactatgacatagacatcaagcttgatataagttcccccaaggcttcagacaaggagctatccaagggagattttcttactgtcaaggacgagctcttcaaggatgagagctttcggcggctttcatcagctgttgcttatgatggaaaaagaaatttatttacttgtgctgagctaccagatggtttgtttcgtgtcaaagtccgttcacggacttacattgtatctgtggagttcaagaagaagcttcctttgagccaactctcggaactgcctgtgcccagagaggtcttgcaggggcttgatgtcattgtgcgtgaggcctctagctggcgcaagattatcattggtcagggattttactcgcagggccgcagtgtgcccattgggccggatgttgtagctctcaaaggaacccagcagaccctgaaatgcactcagaaaggactgatcctttgtgtggactattcggttatgccgtttcgcaaagctggacctgtgttggatcttgttcagaagtctgtgagataccttgactacaggacaacactaaacaaacaccaattggacactttgaagaatgaactcaaaggccagcgtgtcactgtaaatcataggaggacaaagcagaagtacattgttaaaggtttgactgataaacctgcaagtcagataacttttgtagattctgaatcaggacagaccaagaagcttcttgattactattcgcagcagtatggcaaggttattgagtatcaaatgcttccatgcttggatttgagcaagagcaaggacaagcaaaactatgtgccgattgaattgtgtgatcttcttgaagggcagagatacccaaaagcaagcttaaataggaattctgataaaacactgaaagaaatggctttgatccctgcctcaagtaggaaggaggagattctggagttggtgaatgctgacgatgggccttgcaggggtgaaattgctcagcagttcgggatttctttggatgtacaaatgatggaagtcactggtaggacccttcctcctcccagcctaaaacttggcacctccagtggccaaccccccaaattcaatattgatcagcctaactgccagtggaaccttacgaggaaaagactagcagagggcggggtgctacagtgctggggcgttgtggacttcagtgcagattctgggcagtacgccctgaatgggaacatgtttattgacaagattgtcaggaagtgctgcgaccttggcgtacagatgaaccgtaacccatgcattgtgcaactgttagatatggaggtgctatccgatccacatcagctcttcgaggagcttaacaaagctaagcaggcggcagccagtaagaaacagaagctgcagctcctcttctgcccaatgtctgatcagcatcctgggtacaagacgctgaagcttatctgcgagacgcagctggggatccagacccagtgcttcttgagcttcctcgcgaacaaacaacagggacaggaccagtacatgtccaaccttgctctgaagatcaacggcaagattggaggaagcaacatccaactgtttggtgaatcgctcccgcggatctccggcgcgccatacatgttcatcggcgccgacgtgaatcacccatcgccggggaacgtcgagagcccgtcgattgcagcagtggtggcctcggtggatcaaggcgccagcaagtacgtgccaagaatccgcgctcagcctcaccgctgcgaggtgatccagcacctcggcgacatgtgcaaggagctcatcggcgtgttcgagaagcggaaccgcgtgaagccccagaggatcatctacttccgcgacggcgtcagcgacggtcagttcgacatggtgctgaacgaggagctggcggacatggagaaggcgatcaagaccaaggactactccccgacgatcaccgtgatcgtggccaagaagcggcaccacaccaggctgttccccaaggacctgaaccagcagcagaccaagaacggcaacgtgctccccggcacggtggtggacaccggcgtggtcgacccggcggcgtacgacttctacctgtgcagccacaacgggctgatcgggacgagccggccgacgcactactacagccttctggacgagcacggcttcgcctccgacgacctgcagaagctggtgtacaacctctgcttcgtcttcgcccgctgcaccaagccggtgtcgctggccacgcccgtctactacgccgacctcgccgcctaccgcggcaggctctactacgagggcatgatgatgtcgcagccgccaccgtcttccgcggcgtcggcgtcgtcggcatcctcctccggcgccggcgcttccgacttcaggagcttcccggcgctgcacgaggatctggtggacaacatgttcttcatctgacgacagcctttcgtcgcatggtccggtggtctctctctgttcttagtttacctcttactgcgtggagtctcaggtcatagactcattagtcacagactcacaggttgtctatcttttgacttttgttgaccgtgtcgtcggtcttggtagttggtagtcttatacatactgttgaggctgcattatggttgcacaagaaagtttaagagtactatactggtactctgtattttgcaattctcgtgcggatgctatggagtaggatgtttctaga

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