LOCUS       NM_001419807            3089 bp    mRNA    linear   PLN 19-APR-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC4-like (LOC4336705), mRNA.
ACCESSION   NM_001419807 XM_015781661
VERSION     NM_001419807.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Wang Z, Tian X, Zhao Q, Liu Z, Li X, Ren Y, Tang J, Fang J, Xu Q
            and Bu Q.
  TITLE     The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular
            Wax Biosynthesis by Promoting the Degradation of Transcription
            Factor ROC4 in Rice
  JOURNAL   Plant Cell 30 (1), 228-244 (2018)
   PUBMED   29237723
  REMARK    GeneRIF: These results suggest a mechanism whereby DHS negatively
            regulates wax biosynthesis by promoting the degradation of
            ROC4.[DHS]
REFERENCE   2  (bases 1 to 3089)
  AUTHORS   Wei J, Choi H, Jin P, Wu Y, Yoon J, Lee YS, Quan T and An G.
  TITLE     GL2-type homeobox gene Roc4 in rice promotes flowering time
            preferentially under long days by repressing Ghd7
  JOURNAL   Plant Sci 252, 133-143 (2016)
   PUBMED   27717449
  REMARK    GeneRIF: Roc4 is an LD-preferential flowering enhancer that
            functions downstream of phytochromes and OsGI, but upstream of
            Ghd7.
REFERENCE   3  (bases 1 to 3089)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK112099.1, AB101647.1, AK111914.1, CI122393.1 and CI075179.1.
            
            On Apr 19, 2023 this sequence version replaced XM_015781661.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK112099.1, AK111914.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-784               AK112099.1         2-785
            785-1412            AB101647.1         649-1276
            1413-2269           AK111914.1         1397-2253
            2270-2565           CI122393.1         26-321
            2566-3089           CI075179.1         44-567
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3089
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="homeobox-leucine zipper protein ROC4-like"
                     /db_xref="GeneID:4336705"
     exon            1..205
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..2557
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="GL2-type homeodomain protein; HD-ZIP protein ROC4;
                     Homeodomain transcription factor ROC4; LOC_Os04g48070;
                     OSJNBb0032E06.7; Protein RICE OUTERMOST CELL-SPECIFIC 4;
                     GLABRA 2-like homeobox protein 4"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC4"
                     /protein_id="NP_001406736.1"
                     /db_xref="GeneID:4336705"
                     /translation="

MQFPFSGAGPGVFTSSPALSLALADAVAGRNSGGGGKMVTAAHGGVGGGGGGGRAKARDALEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENARLKDELSRVCALAAKFLGKSISVMAPPQMHQPHPVPGSSLELAVGGIGSMPSATMPISTITDFAGAMSSSMGTVITPMKSEAEPSAMAGIDKSLFLELAMSAMDELVKMAQMGDPLWIPGASVPSSPAKESLNFEEYLNTFPPCIGVKPEGYVSEASRESGIVIIDDGAALVETLMDERRWSDMFSCMIAKASTTEEISTGVAGSRNGALLLMQAELQVLSPLVPIREVKFLRFSKQLADGVWAVVDVSADELMRDQGITSASSTANMNCRRLPSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGNTVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSGFAILPAGPSIGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCDV"

     misc_feature    320..472
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V9.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            206..498
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            499..616
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            617..1324
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1325..1426
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1427..1654
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1832
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1833..2206
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2207..3089
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcacgcactgctgctgctgctcgctctcgctttgcttcccctaatcttctcccgggccaggggggaagaggggcggaattcgggcacgagctttggagttggagatcacttcggcgacggcgtggtccccgccggcatgcagttcccgttctccggcgctggcccgggcgtcttcacgtcatcgccggcgctctccctcgcgctggcggacgcggtggcaggccggaacagcggcggcggtgggaagatggttaccgcggcccatggcggcgtcggcggaggaggaggaggaggacgcgcgaaggcgagggacgcgttggaggtggagaacgagatgagccggtccgggagcgaccacctcgacgtcgtctcttgcggcgacgcgggcggcggcggcggcgacgacgacgatgacgaggacgccgagcacggcaacccgcccaagcgcaagaagcggtaccaccgccacacgccgcagcagatccaagagctggaagcgatgttcaaggaatgcccccacccagacgagaagcagcgcgccgagctgagcaagcggctcggcctcgaaccccggcaggtcaagttctggttccagaatcggcgaacgcagatgaagatgcaactggagcgacacgagaactcgctgctgaagcaggagaacgataagctgcggtccgagaacctgtcaatccgggaggccacgagcaacgcggtgtgcgttggctgcggcggcccggcgatgctcggggaggtgtccctggaggagcaccaccttcgcgtcgagaacgcgaggctcaaggacgagctcagccgagtgtgcgcgctcgccgccaagttccttggcaagtccatctctgtcatggcgccaccgcagatgcatcagcctcatcctgtgccaggctcgtcgctggagcttgcggttgggggtatcggttcgatgccatcagccacgatgcccatctcgacgatcactgattttgctggcgccatgtccagttcaatgggcacggtgatcacgcccatgaagtctgaggctgaaccatcggcaatggctggcattgacaagtccttgttcttggagctagcaatgagtgcaatggatgagctagtcaagatggctcagatgggggatccgctatggattccaggtgcctccgtaccttcctcgccggcaaaggagagtctaaacttcgaggagtacctaaacaccttcccaccttgcatcggggtgaagcctgaagggtatgtatcagaggcatctagagaatctggcattgtcatcattgacgatggcgccgcgcttgtggagaccctcatggatgagcgacggtggtccgatatgttctcatgcatgattgccaaggcatcaaccactgaggagatttctactggtgttgctgggagtagaaatggtgcattgcttcttatgcaggcagagctacaggtgctttctcctcttgtgcctattagagaggtgaagtttctcaggttctccaaacagctggctgatggtgtatgggctgtagtggacgtttcggctgatgaattgatgagggatcagggcattacttctgcatcctcgactgcaaacatgaactgccgaaggctgccttctggttgtgtgctgcaggacactccaaatgggtttgttaaggtcacatgggttgaacatacagaatatgatgaggcatctgtgcacccgctctaccggcctcttctccggtctggtcttgcccttggtgcagggcgatggatcgcgacattacagcggcagtgcgaatgcttggcccttctcatgtcttctattgcattgccagagaacgactcatcagctatccatcctgaaggtaaacggagcatgttgaagttggcaaggaggatgacggacaacttctgtgcaggggtgagcacatcatctacccgtgaatggagcaaactggttggattgacaggcaacattggggaggatgtgcatgtaatggcgcggaagagtgtggatgaacctggaacgccgccaggtgtggtgcttagtgctgctacatctgtgtggatgcctgtgatgcctgaacggctcttcaacttcttgcacaacaaggggctgcgtgctgaatgggatatcctcagcaatggtggccctatgcaggaggtgacaagcattgccaaggggcaacagaatggcaataccgtatgtctactgaaggctagtcccaccaaagacaagcagaacagcatgctgatcctacaggagacgtgtgcagacgcatccggttcaatggttgtgtatgctcctgtagacatcccagcaatgcaccttgtcatgagtggtggggattcgtcatgcgtcgcccttcttccatcaggttttgccatcctgcctgctgggcctagcatcggcgcagatcacaagatgggcggttcattgctcaccgttgcattccagatacttgccaacagccagcccagtgctaagctcacggtggagtcagtcgagaccgtgagcaaccttatctcctgcaccatcaagaagatcaagacggcgctgcattgcgacgtgtgaacccaacaaggggggacttttggcctagtgggagcggctgtggcgatgagcctgagtcaagaacgaaccgcgacataggaagggacctttgctaggtggcaaggaccggacggggcaggtccttagcacagagcaatggtggtggttcgggtattgactcagcctctcccgcctccgttctctcctgtgactggtgcatgttgaagtgaacctgcattttggacgccatgtagcaggccatctttctttctttttcctttttctttttctttttctttttttagggagaagggagtcatctgtgttttttgttggctggctcagggtgttggtgtttctggtttctagcttttgttacagggagatgtgatacattttgtagaagctccgaattgtcgtgctggtatgtgaggttctgatcataggtctgtgtttgatagtctcgagctatcaacgcctggcaaatgcaaaccttgttatgctaaaatatgttttagatcaatctgattctgaaagctgtttacatgtccca

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