LOCUS       NM_001419070            3374 bp    mRNA    linear   PLN 30-MAR-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 4B-like (LOC4335025),
            mRNA.
ACCESSION   NM_001419070 XM_015781187
VERSION     NM_001419070.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3374)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3374)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI745468.1, AK122078.1, CF306963.1, CB663612.1, CI286553.1,
            CA755466.1, CB663613.1, CI313927.1 and CI394960.1.
            
            On Mar 28, 2023 this sequence version replaced XM_015781187.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN08474110
                              [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               CI745468.1         2-359
            359-808             AK122078.1         527-976
            809-1274            CF306963.1         13-478
            1275-1984           CB663612.1         1-710
            1985-2253           CI286553.1         11-279
            2254-2422           CA755466.1         5-173
            2423-2993           CB663613.1         225-795             c
            2994-3342           CI313927.1         1-349
            3343-3347           CI394960.1         441-445
            3348-3374           CI313927.1         355-381
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3374
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="protein argonaute 4B-like"
                     /db_xref="GeneID:4335025"
     exon            1..125
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    92..94
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="upstream in-frame stop codon"
     exon            126..373
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..2869
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="LOC_Os04g06770"
                     /codon_start=1
                     /product="protein argonaute 4B"
                     /protein_id="NP_001405999.1"
                     /db_xref="GeneID:4335025"
                     /translation="

MDAHDGEADELPPPPPVPANVVPIKADDVESEVPANKPAKPKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVRRPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPFDVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVTQCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC"

     misc_feature    134..286
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JF58.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    233..2866
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    578..646
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JF58.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            374..579
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            580..804
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            805..941
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            942..1039
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1137
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1303
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1304..1420
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1421..1528
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1529..1591
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1705
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1706..1871
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1872..1984
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            1985..2122
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2123..2250
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2251..2316
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2317..2380
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2381..2492
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2493..2566
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2567..2661
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2662..2693
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
     exon            2694..3374
                     /gene="LOC4335025"
                     /gene_synonym="AGO4B; OsAGO4b; OsJ_13701"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agtcagtagtactcgagtatctccccattcctcctcgcgtaaaagaaaatctcccgtctcgtcgtctccgttccttgcgccatctcgcggctgaacaggggtcgcgagcagagcaggggatcctgctcatagaatggacgctcatgatggtgaggccgatgagttgccgccgcctcctcccgtacctgcaaatgtggtgcctattaaagctgatgacgttgagagcgaggtgccagcaaacaaaccagcaaaacctaagcggtttccaatggccaggcctggtttagggagaaaaggacagccaatccagctcttggcgaatcattacaaagtttctgtgaagagtagtgaagaatatttcttccactacaatgttattctgaagtatgaggatgatcgaccggttgatgggaaaggggtaggtcgaaaggtgattgataaactgcagcaaacctaccgttctgagctttcaagcaaggactttgcctatgatggtgaaaagagcctgtttacaattggtgctcttccacaagtaactaatgagttcacagtggtgttggaggatgtttcaactggaaagactgctgccaatggaagccctggaggtaatgacagccctggaggtagtgacaggaagagagttaggagaccataccagaccaagactttcaaagtggagctgtgctttgcagcaaagatccctatgaatgcaattgctcaggccataaaaggtcaagaatcagagaactcccaagaagctctcagagttcttgatataatattaaggcagcactctgctaaacagggctgccttttagtacgccagtcatttttccacaacaatcctaataactttgttgacctgggtggtggtgtgatgggctgtcgaggattccattcaagtttccgtggcacacagagtggactttctctgaatatcgatgtttcgacaactatgattgttaaacctggtcctgttatcgattttcttcttgccaaccagaaagttgatcaccctgacagaattgattggcaaaaggccaagcgtgctctcaagaacttgaggataagaaccacccctgtgaattcagaattcaagatcattggtttgagtgacagaaattgcaacgaacagatgttttcgttgaggcagaggaatgggaacaatggggatgttgatgaagttgaagttacagtctatgattactttgtgaaaaacaaaggcatagagctgcgctattctggcaatcttccttgcataaatgtggggaaaccaaagcgtccaacttattttccaatagagctatgctctcttattccactacaaagatacaccaaagctttgtcaacactgcaaaggtcctcccttgttgagaaatccagacagaagccccaggaaagaatgtcagtccttaatgatgcacttcgacatagtaattatgattctgatcccatgttgagggcatctggcatttcaattgcccaaaattttactcaagttgaaggaagggtcctgcaacccccaaagctgaaagctggcaatggtgaagatatattcccacgcaatggtcggtggaacttcaacaataagaaactgattcagacctgttctgtcgataagtgggcagtagttaatttctctgcacgctgtgatgtgcgaaatcttatccgggacctcataagaaatgcatctgcgaaggggattcaaatggccgaaccttttgatgtgtttgaagagagcccctcattgaggcgagcacctgtatcaagaagagtagatgatatgtttgaacagataaaatcgaaacttcctggagctccgaaattcctcttgtgccttcttcctgagaggaaaaattgtgaagtttatggtccttggaagaggaagtgtcttgctgaattcggtattgtcacacaatgccttgctccacaaagagtcaatgatcagtacctactcaatttgctattgaagataaatgccaagcttggtggaataaactcattgctgcaaattgaagcatccccttcaatacctcttgtatcgaagacacctaccatcatcttaggtatggatgtgtcacacggtcaaccaggacaatctgatagaccttccattgctgcggtggttagctctcgccaatggcctctcatctctaaatacagagcatcggtgcacactcagtcacctaagctagaaatgatgtcttccttgtttaagccacgaggaactgaagatgatggcctcattcgggaatcgctgattgacttctacactagttctggaaaacggaaaccggatcatgttatcgttttcagggatggagttagtgaaagccagtttactcaggtcattaacattgagcttgatcagatcattgaggcatgcaaatttctcgatgagaagtggtcaccaaagttcacagtgattgttgctcagaagaatcatcataccaaattttttcagtctggatctccagataatgttccgccaggtactgttgtggacaaacaagtgtgccatccaaggaattatgacttctacatgtgtgctcatgctggaatgattggaacgacgaggccaacacattatcatgttctgcacgatgagataggtttctcccctgatgatctgcaggagctagtgcactcactctcttatgtgtatcagagaagcacaacagccatatcagttgttgctccgatttgctatgcccatcttgctgctgctcaggtgggcacattcctcaagttcgaagatatgtcggacgcgtcgtccagccaaggaggtcatacgtctgtcggaagtgtaccggtgcctgagctgcctcgcctccatgagaaagtgaggagctccatgtttttctgctgatcgtgccgcctctcgatcaaatgctcgccgacgttgagaaatccggtgatcggcctgggggaactactagtacttttgcttctcataattaggaacatgtatggaacctatgtacctgcccttggcatgctgcctgtgtcatggattatctgctggtaggagtatcctttaaccaaacccttttagcttttaagttaggtttaatggactgctgtttagtatgtggtgtggtgttagtaagtttccagacttcgacattgtgcagctatgcctattgctggttatggtcccttcccttctatgtagcatgtgccgtttccctttgtctgagttgattttagaaatagtatctgatctgttcgaggttggggatgaatgaccaaggaaatctttccttgtggttatcatgacatcattgatatcctcaggattactcatcatcagtttactgacgggtaaaatataactggcatggatgaaattatgacgattttcttcccacaac

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