LOCUS       NM_001418837             775 bp    mRNA    linear   PLN 24-MAR-2023
DEFINITION  Oryza sativa Japonica Group thioredoxin H2-2-like (LOC4334453),
            mRNA.
ACCESSION   NM_001418837 XM_015776218
VERSION     NM_001418837.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK062383.1, AU069205.1 and CI237600.1.
            
            On Mar 24, 2023 this sequence version replaced XM_015776218.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK062383.1, CI237600.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03003383, SAMN04338661
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AK062383.1         2-102
            102-397             AU069205.1         48-343
            398-775             CI237600.1         173-550
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..775
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="thioredoxin H2-2-like"
                     /db_xref="GeneID:4334453"
     exon            1..245
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..512
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="LOC_Os03g58630; OSJNBa0052F07.8"
                     /codon_start=1
                     /product="thioredoxin H2-2"
                     /protein_id="NP_001405766.1"
                     /db_xref="GeneID:4334453"
                     /translation="

MGSFFSTMFTPPPAADDGGDSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFISSSSS"

     misc_feature    108..167
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q851R5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    237..485
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="TRX family; composed of two groups: Group I, which
                     includes proteins that exclusively encode a TRX domain;
                     and Group II, which are composed of fusion proteins of TRX
                     and additional domains. Group I TRX is a small ancient
                     protein that alter the redox...; Region: TRX_family;
                     cd02947"
                     /db_xref="CDD:239245"
     misc_feature    255..257
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="Deprotonates C-terminal active site Cys.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q851R5.1); other site"
     misc_feature    order(273..275,282..284)
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239245"
     misc_feature    276..278
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="Contributes to redox potential value.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q851R5.1); other site"
     misc_feature    279..281
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /note="Contributes to redox potential value.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q851R5.1); other site"
     exon            246..368
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /inference="alignment:Splign:2.1.0"
     exon            369..747
                     /gene="LOC4334453"
                     /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaaaaccaacaagaagagttgttgcttgcgctcacgcgaagcgaagaggagcaaggcgagaaaagagagagagagagagagagaaccaaaccaagcacgcgaccgagatgggctccttcttctcgacgatgttcacgccgccgcccgccgccgacgacggcggcgactcgcgcgtggtggccgtccactccacggccacctgggacgagcagtggggcgcccacaagagcaaccccaacaagctgatcgtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccggccttcaaggacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacgaactttcggaagtggcgaggcaatggaaagtggaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggtgctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcctaaatcccaaacttatgcctgcattcctcatttagtaccaggctctggtttctctcggtgctaggagtgagagaccctgtggttgtcctcttaaaaatgctgcaaaattcgatgtgaagtgggagtaaacgcgtttaagacaataaacttgtgatacttgggaatggaaatgtaattgcctgttgctcttgagtcatcatctgatcatattcaattctttattgatatttccgcaataaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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