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2024-04-29 04:13:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001418834            3476 bp    mRNA    linear   PLN 24-MAR-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute MEL1-like
            (LOC4334449), mRNA.
ACCESSION   NM_001418834 XM_015773749
VERSION     NM_001418834.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3476)
  AUTHORS   Nonomura K, Morohoshi A, Nakano M, Eiguchi M, Miyao A, Hirochika H
            and Kurata N.
  TITLE     A germ cell specific gene of the ARGONAUTE family is essential for
            the progression of premeiotic mitosis and meiosis during
            sporogenesis in rice
  JOURNAL   Plant Cell 19 (8), 2583-2594 (2007)
   PUBMED   17675402
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB297928.1 and CI106949.1.
            
            On Mar 24, 2023 this sequence version replaced XM_015773749.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB297928.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3031              AB297928.1         1-3031
            3032-3476           CI106949.1         6-450
FEATURES             Location/Qualifiers
     source          1..3476
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..3476
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="protein argonaute MEL1-like"
                     /db_xref="GeneID:4334449"
     exon            1..767
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..3248
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="ARGONAUTE family protein; LOC_Os03g58600;
                     OSJNBa0052F07.11; Protein MEIOSIS ARRESTED AT LEPTOTENE 1"
                     /codon_start=1
                     /product="protein argonaute MEL1"
                     /protein_id="NP_001405763.1"
                     /db_xref="GeneID:4334449"
                     /translation="
MAYRGGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAVVYGAPMPAAHHQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPPSHSSAPAPYQPAAAAPAPSSSSTAPSATALAKEFEQKLFVSETALAPPAAVASAAAAPAGEASVESDKDLAPVSKKGLAHPARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKITIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQLIFPVDDNGTRKTVVQYFWDRYNYRLKYASWPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNDKQVTNILRATCQRPQQREQSIHEMVLHNKYTEDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFSRMRPEEVQRFCGDLIQMCNATGMSFNPRPVVDVRSTNPNNIENALRDVHRRTSELLAREGKGGLQLLIVILPEVSGSYGKIKRVCETDLGIVSQCCLPRHASRPNKQYLENVALKINVKVGGRNTVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVASMDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKVVNGGMIRELLIAFRKKTGRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC"
     misc_feature    72..302
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q851R2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <207..437
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    414..512
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q851R2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    672..3245
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            768..973
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1123
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1124..1257
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1367
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1474
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1613
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1730
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1731..1838
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1910
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2030
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2031..2196
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2318
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2319..2459
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2460..2599
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2600..2662
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2663..2726
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2727..2862
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2863..2936
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            2937..3031
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            3032..3063
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
     exon            3064..3452
                     /gene="LOC4334449"
                     /gene_synonym="MEAL1; MEL1; OsMEL1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ctcacccactccccaccccttcccaaaccctcacctccatctcgttgccttcctccacctctctctctgccatggcctaccgcggcggaggccgaggtggccgcggcggcgagcagcggccgccctactccggccgcggcgacgtccctggccgtggtggcggtggtggtgggggtggagccccgccgtaccgtcccgcctcgggcttcgtgtggccgccgccggggatgacgccgcggccggggcctcctcagccgcagtacccgcggccggggccgccggccgtcgtctacggcgcgccgatgccggcggcgcaccaccagggcgcgtaccagcccgggggcgtgtaccgtgcgccctccccgggggttccggtgatcggtggctacgcgcgcagcacgcccgtcaccatccgggcgcctccgccgtcgcactcgtcggctccggctccgtaccagccggcggcggccgcgccggctccctcgtcgtcctccacggcgccgtccgctacggctctggccaaggagttcgagcagaagctgttcgtgtcggagaccgcgctggcgccacccgcggcggtggcgtcggccgcggccgcgccggctggcgaggcgtcggtggagtcggacaaggatctggcaccggtgtcgaagaaggggctcgcccaccctgcgcggccggggttcggagcggccgggaagaaggtgatgatccgcgcgaaccacttcctcgtcaatgtcgccgacaacaacctcttccactacgatgtttcaatcaatcctgagtcaaaatcaagagcaacaaatagggaagtactcaatgagctcatcaagttgcacgggaagacatctcttggtggcaaattgcctgcctatgatggaagaaagagtctctatactgctggttcactcccttttgaatcggaggagtttgtggttaagctaattgatcccgaaaagaaggataaagaaagggcggagagggagtacaagatcacaattcggattgctggcagaacagacttgtaccacctccagcagtttttgcttggaagacagagggatatgccccaagaaaccattcaagttcttgatgttgtccttagggagtcaccatcttggaattatgtcacagtgtccagatccttcttctctacccagtttggtcaccggggtgacattggtgagggacttgagtgttggagaggttactatcagagcctgcgcccaacacagatgggcctttcgctgaatatagatatatctgcaacgtccttttttaagcctgtgacagtgatccaatttgtggaggagttcctgaacatacgtgacacctcaagacctttgtcagaccgggatcgtgtgaagataaagaaagcattacgtggggttcgcattgaaacaaaccaccaagaggaccaaatcagaagatacaagataacagggattacccccattcctatgagccagctgatatttcctgttgatgataatgggacaaggaagactgttgttcagtacttctgggataggtacaattacagactgaagtacgcttcttggccctgcctacagtctggcagtgattctcgccctgtatacttacctatggaggtgtgcaagattgtagaagggcagaggtactccaagaagcttaatgacaaacaagtgaccaacatccttagagcaacctgtcaacgcccccagcagagggaacagagcattcatgagatggttctccacaacaagtatacagaggataggtttgctcaggagttcggtatcaaggtctgcaatgacctagtctctgttccagcccgtgtgctgcctccacccatgttgaagtatcatgattctggaagggagaaaacttgtgcacccagtgttggacagtggaacatgattaacaagaaaatgatcaatggaggaactgtggataactggacatgtctgagtttttcacgaatgcgtcctgaggaggtacaaaggttctgtggtgacctgattcagatgtgcaatgccactggaatgtctttcaatccaagaccagtcgtggatgtccggtcaacaaatcctaacaatatagagaatgctctgagggatgttcacaggagaacatcagaactgctagccagagagggaaagggaggcctgcagcttttaattgtaattctgcctgaagttagtggttcttatgggaaaattaaaagggtctgtgagactgaccttggcattgtatctcaatgttgtttgccaaggcatgccagcaggccgaacaagcaatatttggaaaatgttgcactcaaaatcaatgtcaaggtcggagggcgcaacactgttcttgagcgagcctttatccgcaatggcataccatttgtgtcagaagtcccaacaatcatctttggcgctgatgtcacacaccctccacctggagaggactctgcatcatctattgctgcggttgtggcatctatggattggcctgaaatcaccaaataccgaggtctggtctctgctcaaccacatagacaggagataatagaagatctctttagtgttggtaaagatccagtgaaggttgtaaatggtgggatgatcagggagttgcttatcgcattccgcaagaagactggcagaaggcctgagaggataatcttctatagagatggtgtaagtgaaggtcagttcagccatgtgcttcttcatgaaatggatgccatcagaaaggcttgtgcatctttggaggagggatatctaccacctgtcacatttgtagtagttcagaaaaggcatcacacaaggcttttcccagaggttcatgggaggcgagacatgactgacaagagcggaaacatccttcctggaactgtcgtggaccgtcagatttgccatcctacagagttcgatttctacctgtgtagccatgctggcatacagggtactagcaggccaactcattaccatgtcctttacgatgagaaccattttacagccgatgcacttcagtccctgaccaacaatctttgctatacctatgcgcgatgcacccgggcagtgtctgtggtcccaccggcctactatgctcatcttgctgcattccgcgctcgctactacgtggaaggagagagttcggatggtggctcgacccctggcagcagcgggcaggctgtggcgcgagagggccctgtggaggtgcgccagcttcccaagatcaaggagaacgtcaaggacgtcatgttctactgctgaggagattgttggcaaggagagcccaatattctggtagttttttggttggtagacttgtttgtgtccttggtttggagctggttgcttgtagttccatttgctgtttccgagtagccggattgtgactgagcttttgtggtctttaaggccttaactctgcttgagacaatgcaagtcttttaaatttccctgtggcttttgttaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]