2024-04-29 04:13:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001418834 3476 bp mRNA linear PLN 24-MAR-2023 DEFINITION Oryza sativa Japonica Group protein argonaute MEL1-like (LOC4334449), mRNA. ACCESSION NM_001418834 XM_015773749 VERSION NM_001418834.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3476) AUTHORS Nonomura K, Morohoshi A, Nakano M, Eiguchi M, Miyao A, Hirochika H and Kurata N. TITLE A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice JOURNAL Plant Cell 19 (8), 2583-2594 (2007) PUBMED 17675402 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AB297928.1 and CI106949.1. On Mar 24, 2023 this sequence version replaced XM_015773749.2. ##Evidence-Data-START## Transcript exon combination :: AB297928.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMD00008650, SAMD00020310 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3031 AB297928.1 1-3031 3032-3476 CI106949.1 6-450 FEATURES Location/Qualifiers source 1..3476 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..3476 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="protein argonaute MEL1-like" /db_xref="GeneID:4334449" exon 1..767 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" CDS 72..3248 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="ARGONAUTE family protein; LOC_Os03g58600; OSJNBa0052F07.11; Protein MEIOSIS ARRESTED AT LEPTOTENE 1" /codon_start=1 /product="protein argonaute MEL1" /protein_id="NP_001405763.1" /db_xref="GeneID:4334449" /translation="
MAYRGGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAVVYGAPMPAAHHQGAYQPGGVYRAPSPGVPVIGGYARSTPVTIRAPPPSHSSAPAPYQPAAAAPAPSSSSTAPSATALAKEFEQKLFVSETALAPPAAVASAAAAPAGEASVESDKDLAPVSKKGLAHPARPGFGAAGKKVMIRANHFLVNVADNNLFHYDVSINPESKSRATNREVLNELIKLHGKTSLGGKLPAYDGRKSLYTAGSLPFESEEFVVKLIDPEKKDKERAEREYKITIRIAGRTDLYHLQQFLLGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTQFGHRGDIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLNIRDTSRPLSDRDRVKIKKALRGVRIETNHQEDQIRRYKITGITPIPMSQLIFPVDDNGTRKTVVQYFWDRYNYRLKYASWPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNDKQVTNILRATCQRPQQREQSIHEMVLHNKYTEDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFSRMRPEEVQRFCGDLIQMCNATGMSFNPRPVVDVRSTNPNNIENALRDVHRRTSELLAREGKGGLQLLIVILPEVSGSYGKIKRVCETDLGIVSQCCLPRHASRPNKQYLENVALKINVKVGGRNTVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVASMDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVKVVNGGMIRELLIAFRKKTGRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC"
misc_feature 72..302 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="propagated from UniProtKB/Swiss-Prot (Q851R2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature <207..437 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 414..512 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="propagated from UniProtKB/Swiss-Prot (Q851R2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 672..3245 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" exon 768..973 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 974..1123 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1124..1257 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1258..1367 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1368..1474 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1475..1613 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1614..1730 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1731..1838 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1839..1910 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 1911..2030 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2031..2196 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2197..2318 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2319..2459 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2460..2599 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2600..2662 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2663..2726 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2727..2862 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2863..2936 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 2937..3031 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 3032..3063 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" exon 3064..3452 /gene="LOC4334449" /gene_synonym="MEAL1; MEL1; OsMEL1" /inference="alignment:Splign:2.1.0" ORIGIN
ctcacccactccccaccccttcccaaaccctcacctccatctcgttgccttcctccacctctctctctgccatggcctaccgcggcggaggccgaggtggccgcggcggcgagcagcggccgccctactccggccgcggcgacgtccctggccgtggtggcggtggtggtgggggtggagccccgccgtaccgtcccgcctcgggcttcgtgtggccgccgccggggatgacgccgcggccggggcctcctcagccgcagtacccgcggccggggccgccggccgtcgtctacggcgcgccgatgccggcggcgcaccaccagggcgcgtaccagcccgggggcgtgtaccgtgcgccctccccgggggttccggtgatcggtggctacgcgcgcagcacgcccgtcaccatccgggcgcctccgccgtcgcactcgtcggctccggctccgtaccagccggcggcggccgcgccggctccctcgtcgtcctccacggcgccgtccgctacggctctggccaaggagttcgagcagaagctgttcgtgtcggagaccgcgctggcgccacccgcggcggtggcgtcggccgcggccgcgccggctggcgaggcgtcggtggagtcggacaaggatctggcaccggtgtcgaagaaggggctcgcccaccctgcgcggccggggttcggagcggccgggaagaaggtgatgatccgcgcgaaccacttcctcgtcaatgtcgccgacaacaacctcttccactacgatgtttcaatcaatcctgagtcaaaatcaagagcaacaaatagggaagtactcaatgagctcatcaagttgcacgggaagacatctcttggtggcaaattgcctgcctatgatggaagaaagagtctctatactgctggttcactcccttttgaatcggaggagtttgtggttaagctaattgatcccgaaaagaaggataaagaaagggcggagagggagtacaagatcacaattcggattgctggcagaacagacttgtaccacctccagcagtttttgcttggaagacagagggatatgccccaagaaaccattcaagttcttgatgttgtccttagggagtcaccatcttggaattatgtcacagtgtccagatccttcttctctacccagtttggtcaccggggtgacattggtgagggacttgagtgttggagaggttactatcagagcctgcgcccaacacagatgggcctttcgctgaatatagatatatctgcaacgtccttttttaagcctgtgacagtgatccaatttgtggaggagttcctgaacatacgtgacacctcaagacctttgtcagaccgggatcgtgtgaagataaagaaagcattacgtggggttcgcattgaaacaaaccaccaagaggaccaaatcagaagatacaagataacagggattacccccattcctatgagccagctgatatttcctgttgatgataatgggacaaggaagactgttgttcagtacttctgggataggtacaattacagactgaagtacgcttcttggccctgcctacagtctggcagtgattctcgccctgtatacttacctatggaggtgtgcaagattgtagaagggcagaggtactccaagaagcttaatgacaaacaagtgaccaacatccttagagcaacctgtcaacgcccccagcagagggaacagagcattcatgagatggttctccacaacaagtatacagaggataggtttgctcaggagttcggtatcaaggtctgcaatgacctagtctctgttccagcccgtgtgctgcctccacccatgttgaagtatcatgattctggaagggagaaaacttgtgcacccagtgttggacagtggaacatgattaacaagaaaatgatcaatggaggaactgtggataactggacatgtctgagtttttcacgaatgcgtcctgaggaggtacaaaggttctgtggtgacctgattcagatgtgcaatgccactggaatgtctttcaatccaagaccagtcgtggatgtccggtcaacaaatcctaacaatatagagaatgctctgagggatgttcacaggagaacatcagaactgctagccagagagggaaagggaggcctgcagcttttaattgtaattctgcctgaagttagtggttcttatgggaaaattaaaagggtctgtgagactgaccttggcattgtatctcaatgttgtttgccaaggcatgccagcaggccgaacaagcaatatttggaaaatgttgcactcaaaatcaatgtcaaggtcggagggcgcaacactgttcttgagcgagcctttatccgcaatggcataccatttgtgtcagaagtcccaacaatcatctttggcgctgatgtcacacaccctccacctggagaggactctgcatcatctattgctgcggttgtggcatctatggattggcctgaaatcaccaaataccgaggtctggtctctgctcaaccacatagacaggagataatagaagatctctttagtgttggtaaagatccagtgaaggttgtaaatggtgggatgatcagggagttgcttatcgcattccgcaagaagactggcagaaggcctgagaggataatcttctatagagatggtgtaagtgaaggtcagttcagccatgtgcttcttcatgaaatggatgccatcagaaaggcttgtgcatctttggaggagggatatctaccacctgtcacatttgtagtagttcagaaaaggcatcacacaaggcttttcccagaggttcatgggaggcgagacatgactgacaagagcggaaacatccttcctggaactgtcgtggaccgtcagatttgccatcctacagagttcgatttctacctgtgtagccatgctggcatacagggtactagcaggccaactcattaccatgtcctttacgatgagaaccattttacagccgatgcacttcagtccctgaccaacaatctttgctatacctatgcgcgatgcacccgggcagtgtctgtggtcccaccggcctactatgctcatcttgctgcattccgcgctcgctactacgtggaaggagagagttcggatggtggctcgacccctggcagcagcgggcaggctgtggcgcgagagggccctgtggaggtgcgccagcttcccaagatcaaggagaacgtcaaggacgtcatgttctactgctgaggagattgttggcaaggagagcccaatattctggtagttttttggttggtagacttgtttgtgtccttggtttggagctggttgcttgtagttccatttgctgtttccgagtagccggattgtgactgagcttttgtggtctttaaggccttaactctgcttgagacaatgcaagtcttttaaatttccctgtggcttttgttaaaaaaaaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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