LOCUS       NM_001418724            1407 bp    mRNA    linear   PLN 23-MAR-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 8
            (LOC4334261), mRNA.
ACCESSION   NM_001418724 XM_026023682
VERSION     NM_001418724.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1407)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK107296.1.
            
            On Mar 23, 2023 this sequence version replaced XM_026023682.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK107296.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMN02716061
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1407              AK107296.1         1-1407
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1407
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="homeobox protein knotted-1-like 8"
                     /db_xref="GeneID:4334261"
     exon            1..455
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    78..80
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="upstream in-frame stop codon"
     CDS             141..1151
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="Os03g0771400; Homeobox protein OSH43;
                     LOC_Os03g56110; OSJNBa0072F13.3"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 8"
                     /protein_id="NP_001405653.1"
                     /db_xref="GeneID:4334261"
                     /translation="

MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQGQVSPAGAEAAVKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQLDEADGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPILEAAEFFSRVETQLDSLAGTGSSEEEQDPSDKQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGLAAAAALPLYMGRPFVVDGMYRLGS"

     misc_feature    141..356
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10ED2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    384..503
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    501..584
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10ED2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    564..698
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    747..809
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    order(813..827,831..833,891..893,909..911,948..950,
                     954..959,966..971,975..983,987..992)
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(819..821,828..830,957..959,966..971,978..980)
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    867..983
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            456..593
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /inference="alignment:Splign:2.1.0"
     exon            594..702
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /inference="alignment:Splign:2.1.0"
     exon            703..899
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1407
                     /gene="LOC4334261"
                     /gene_synonym="OSH43"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcttcacattccctgcatccatccatctcaaccaccaccacctcatttcaggagatcatctcctccttttctttgctagggtttgtttgccataactactatctatcgcctcttcttcacctcacctgtcctgtcggccatggagagcttcgccagtctcgcaggaggtggcagcagcagcaccacagctcggttgccggagctgatctcgccggagaacccggaccacatctcgccgcccccgttgctgtaccagctgctcgccggcccggagtcgtcggcgcggcagcatgggcatgatgggcatcaccacggcggcggtggcggcgaagcagcagcagcagctgtgcagggacaggtctcgccggcaggcgcggaggcggcggtcaaggccgagatcatgtcgcatccacagtactcggctctcctagccgcctacttaggctgcaaaaaggtcggggcgccgccggatgtactgaccaagctcacggctgtgccggcggcgcagcagctggacgaagccgacggccaccctcgtcgccggcacgagccacagcgtgatgacgacccggatcagctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctggagcggccgatcctggaagccgcggagttcttcagcagggtggagacgcagctcgattcgctcgctggcacgggatcatcagaggaagagcaagaccctagtgacaagcagctgaagcaccagcttctgaggaagtacggtggctcgttgggcgatctccggcaggtgttctccaagaggaccaagaaagggaagcttcccaaggaggccaggcagaagcttctgcactggtgggagctgcactacaagtggccctatccctccgagatggagaagatgacgctggcgcagacgacggggctggaccagaagcagatcaacaactggttcatcaaccagaggaagcggcactggaagccgacgccggtggcaggcacggccttcccgacgatggaagctgccggaggcggcttccgacactccggccacggcggcggccttgcggcggcggcggcgctgccgctgtacatgggcaggccgttcgttgtggacggcatgtaccggctcgggtcttgaagcctctggggatcgcatggtgtttgcatggtgttttttgcttggtaaatatttgctagcagcttcccatgatcagcctgtgggatggtgaaatggaagaactgatgaatcttcatcacgatctttcctctcatttttttttctttggtgtgtgataaaagctcagatgtaccacgtactactgtctgcttctttgcaaatggatatgtaattgaaagctttaattctaaacatgggactcctccgtttttatatt

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