LOCUS       NM_001418404            1656 bp    mRNA    linear   PLN 21-MAR-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 4
            (LOC4333698), mRNA.
ACCESSION   NM_001418404 XM_015773346
VERSION     NM_001418404.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AP014959.1.
            
            On Mar 21, 2023 this sequence version replaced XM_015773346.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN02716062,
                              SAMN03003175 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-477               AP014959.1         26586156-26586632   c
            478-597             AP014959.1         26585874-26585993   c
            598-709             AP014959.1         26585582-26585693   c
            710-978             AP014959.1         26581935-26582203   c
            979-1656            AP014959.1         26581178-26581855   c
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1656
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="homeobox protein knotted-1-like 4"
                     /db_xref="GeneID:4333698"
     exon            1..477
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    181..183
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="upstream in-frame stop codon"
     CDS             226..1239
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="Homeobox protein OSH10;
                     LOC_Os03g47016/LOC_Os03g47022; OSJNBa0035I24.12;
                     OSJNBb0113I20.24; Os03g0673100; OsJ_011583/OsJ_011584"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 4"
                     /protein_id="NP_001405333.1"
                     /db_xref="GeneID:4333698"
                     /translation="

MEQQLPLLAPDSKAATSSPLCLTLDNPTSTSTSPAVPSSAPPPAAALEPSRQSFHERETDAIKAKIMSHPLYPALLRAFIDCQKVGAPPEVVGRLSALAGELDSRAEDRYLQGQSSDPELDEFMETYIDMLVSYRQELTRPIQEADQFFRNMEAQIDSFTLDDNGSEGGNSSEDEQEAGGGDMASAGLPEITSPCAEDKELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHWKPTPPAMEYRSLQPAGAASYGGASAGASTSGGGSAVVRGMEGQHFTGGGAYPRGDP"

     misc_feature    226..393
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75LX7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    406..522
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    568..705
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    700..795
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75LX7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    823..888
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    946..1062
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            478..597
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /inference="alignment:Splign:2.1.0"
     exon            598..709
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /inference="alignment:Splign:2.1.0"
     exon            710..978
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1656
                     /gene="LOC4333698"
                     /gene_synonym="OSH10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgtatctagattttaagttcaaaccacaccctctctctctatctctctctctctctctctctcctctctctccccttctctctcacacacactctgatccaggattggaagacaatcctatagacgactagattagtgccccttcttcccctccttgctccctttaatccccctcactagtagataatttgggatattgtgattagcttggagataagtacacccatggagcagcagcttcctcttcttgcacctgactctaaggctgccacgtcgtcccccttgtgcctcaccttggacaacccaacctccacatccacctcgccggcggtgccgtcgtcggcgccgccgccggcagccgccttggaaccttctagacaatctttccatgagagggaaacggatgcaatcaaagccaagatcatgtcgcaccccctctacccggctctcctcagagccttcatagattgccagaaggtcggagctccgccggaggtcgtcggccggctttccgccctcgccggcgagctcgactcgcgtgcagaagacaggtaccttcaagggcagtcgtcagacccggagctcgacgagtttatggaaacctacattgatatgctggtgagctacaggcaggagctgacaagaccaattcaagaggccgaccagttcttcagaaacatggaggcacagatcgactcgtttacactagatgacaacggctcagaaggtggcaattcctccgaagacgagcaagaggccggcggcggcgacatggcgtcggccggcttgccggagatcaccagcccctgcgcggaggacaaggagctgaagagccacctcctgaacaagtacagcggctacctgagcagcctatggagggagctctccaagaagaagaagaaaggcaagctgccccgggacgctcgccagaagctcctccactggtggcagcttcactaccgatggccctacccatcggagctggagaaggcggcgctggcggagtcgacggggctggacgcgaagcagatcaacaactggttcatcaaccagcggaagcgccactggaagccgacgccgccggccatggagtacaggtcgttgcagcccgcaggcgccgccagctacggcggcgctagcgccggcgcttccacgagcggcggcggctccgccgtcgtccgcggcatggaagggcagcacttcaccggagggggcgcctacccccgcggtgacccgtgatcgatcgatggcccgcattcatgtttcattgatcagtacatggtgtgggtttggtgtgctcataatgtagtataacgatttggtcacatacatatatactccctccgatcccggaaaaaaccaacctagaagagagaacaagacatttcctaatacaacgaatacaaatagttgtccagatttattgtatgcctcgtctactcctaggttggttttttttggaacaaaaagagtatgctgcatatatatacacatatacaaatagatgcatctagctaatgccagagtttaattagttataagggatggtgtaacaatcaaaatgtttcacttgctaacgcacatatatatgattcagtcatatatatattatccactatgcatggtaatggtatacgcatctataaattatataca

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