LOCUS       NM_001418339            3860 bp    mRNA    linear   PLN 18-MAR-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232),
            mRNA.
ACCESSION   NM_001418339 XM_015773926
VERSION     NM_001418339.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3860)
  AUTHORS   Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka
            M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y and Sato
            Y.
  TITLE     The small interfering RNA production pathway is required for shoot
            meristem initiation in rice
  JOURNAL   Proc Natl Acad Sci U S A 104 (37), 14867-14871 (2007)
   PUBMED   17804793
REFERENCE   2  (bases 1 to 3860)
  AUTHORS   Shi Z, Wang J, Wan X, Shen G, Wang X and Zhang J.
  TITLE     Over-expression of rice OsAGO7 gene induces upward curling of the
            leaf blade that enhanced erect-leaf habit
  JOURNAL   Planta 226 (1), 99-108 (2007)
   PUBMED   17216479
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1, AB353924.1 and CI404851.1.
            
            On Mar 18, 2023 this sequence version replaced XM_015773926.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB353924.1, EF486281.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04338660, SAMN04338661
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-261               AP014959.1         19243754-19244014
            262-3651            AB353924.1         1-3390
            3652-3860           CI404851.1         227-435
FEATURES             Location/Qualifiers
     source          1..3860
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..3860
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="protein argonaute 7-like"
                     /db_xref="GeneID:4333232"
     exon            1..805
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    313..315
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="upstream in-frame stop codon"
     CDS             343..3489
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="LOC_Os03g33650; OSJNBa0034E08.23; Protein SHOOT
                     ORGANIZATION 2; Protein SHOOTLESS 4"
                     /codon_start=1
                     /product="protein argonaute 7"
                     /protein_id="NP_001405268.1"
                     /db_xref="GeneID:4333232"
                     /translation="

MEGEREGVVAKNEDNAGGGGGGLGTGGNGGGGGGGSANGRRRWRGGGSSGYRQHPIIQAYPALLPLPINGATGHAHINGAVSLPLPLPPPVLLYLQPPPPPPLLPLLPKVAAATFYGKPPKAADAAPRGSMWKHRPSKKPPPHAITAALLPLPRDGKALQEKIFFANERKTSEKEVNHVDTHEKFTVAPLDNAIARRPDMGGVEGAEIPLSANHFLVQFDPGQKIFHYNVDISPRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKNLYSPVRFQEDRVEFFVSLPVALARCSVVKEDTGHMLDKQKLKTFKVNVRLVSKLCGEDLNKYLNEDKDGIPLPQDYLHALDVVLREGAMESSILVGRSLYARSMGEARDIGGGAVGLRGFFQRLRPTKQGLALNVDLSLSAFHESTGIISYLQKRCDFLKDLPQKKTRALAEEEHREVEKALKNIRVFVCHRETNQRYHVHSLTKETTENLKFRDRSGKDLMVVDYFKEHYNHDIQFRNLPCLQIGRSKPCYVPMELCVVCEGQKFLGKLSDEQTSKILKMGCERPSERKGIIKGVVKGAFHARSDTYADQFSLQVSKHMTKLSGRVLLPPKLKLGSSGRIKDITPDRFDRQWSFLDSHVAEGSKIKSWALISFGGTPEQHFCITKFVNQLSNRCEQLGILLNKKTIISPIFERIQLLNNVGILEGKLKKIQEAASGNLQLLICVMERRHQGYADLKRIAETSIGVVTQCCLYSNLSKLTSQFLTNLALKINAKLGGCNIALYSSFPCQIPRIFLSEEPVMFMGADVTHPHPLDDSSPSVVAVVASMNWPSANKYISRMRSQTHRKEIIEQLDVMAGELLEEFLKEVGKLPSRIIFFRDGVSETQFYKVLKEEMHAVRTTCSRYPGYKPLITFIVVQKRHHTRLFHRERNGSSSHYSDQNIPPGTVVDTVITHPREFDFYLCSHWGTKGTSRPTHYHVLWDENNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLYLERSDTTMYRVSPLQTVPLPKLRDNVKRLMFYC"

     misc_feature    343..492
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75HC2.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    703..765
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q75HC2.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1132..1398
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1429..1578
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1591..1929
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1738..1740,1783..1785,1813..1815,1825..1827,
                     1879..1881,1897..1899,1903..1905)
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    2065..3390
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2503..2505,2515..2517,2551..2562,2569..2571,
                     2593..2595,2602..2604,2614..2616,2626..2628)
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2722..2724,2728..2730,2941..2943,3358..3360)
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /note="active site"
                     /db_xref="CDD:240015"
     exon            806..2060
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /inference="alignment:Splign:2.1.0"
     exon            2061..3851
                     /gene="LOC4333232"
                     /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cacacagcatatgaacagatgcgctctctctctctctctctctgcttcctgactgtgcctgtgtctgccactcccattaataccaaccccatctcgctcccacttcagtccacactcaagtagtactactactccattccgcctcctccacccttcccttctttttgcccccctaccatccaaccatccaagaaccccctttctctctctctctctctctcaggcaagaaacggcgctcaagagcaagaagttgctgccatggcgtgttgatactcttactactaccaccaaaaagctgtgcacggacaggttaaagcggtgtaccgctgactcgcgcggccatggagggggagcgggagggggtggtggccaagaacgaggacaacgcaggcggaggtggtggtggattaggtacaggtggtaatggtggtggcggcggcggcggcagcgcgaacgggcggaggaggtggaggggcgggggcagcagcgggtataggcagcacccgatcatccaggcctacccggcgctcctgccgctgccgataaacggcgccaccggccacgcacacatcaacggcgcggtctcgctgccgctgcctctgccgccgccggtgctgctgtacctgcagccgccaccgccaccgccgctgctgcccctgctccccaaggtcgccgccgccacgttctacggcaagccacccaaggcggccgacgcggcaccgaggggctcaatgtggaagcacaggccatcgaaaaagccgccaccgcatgccattaccgccgcgctgctgccgctcccgcgggatggcaaggcgcttcaggagaaaatattcttcgcaaatgaaagaaaaacatctgaaaaggaggtaaatcatgtagacacccatgagaagtttactgttgcaccactggataatgcaatagcacggagacctgacatgggtggtgttgagggggccgagatccctctttctgcaaaccatttccttgtccagtttgatcctggccagaagattttccattacaatgttgacatatctccgcgtccatcaaaagaaacagcaagaatgatcaagaaaaaattagttgaagaaaatccaagtgttctctcaggttcccaaccagcctttgatggccgcaagaacttatatagtcctgttagatttcaggaggacagggttgagttctttgtcagcctcccagttgcattagcacgatgttcagtagttaaagaggatactggccacatgcttgacaaacagaaactcaagactttcaaagtgaatgtccggttggtttcgaagttatgtggtgaggacttgaacaaatatctgaacgaggacaaggatggcatccctcttccacaagattacctccatgcattggatgttgtgttgcgtgaaggtgctatggaaagttctatccttgtgggtcggtcactgtatgcacgctccatgggggaagcaagggacattggtggtggtgctgttggattaagaggtttctttcagagattgaggccaaccaagcaaggccttgcccttaatgttgatctctcactctcagctttccacgagagcacaggcataatttcatacttgcagaagcgctgtgacttcttgaaggaccttccacagaagaaaacaagggctttggcagaagaggagcacagggaggtggagaaagcattgaaaaatatccgggtatttgtgtgccatcgtgagactaatcaaaggtaccatgtgcatagcttgactaaggagacaacagagaacctcaagtttcgcgaccgaagtgggaaggatcttatggtggtggattacttcaaggagcactataaccatgatatacaattcaggaaccttccatgcttgcagattggcaggagcaagccatgttatgtgccaatggagctttgtgtagtttgtgagggccagaagtttcttggcaagctgtctgatgaacaaacttctaagattctgaaaatgggttgtgaaagaccgagtgaaagaaagggaatcataaagggtgttgtcaaaggtgcatttcatgcaagaagcgatacttatgctgatcagtttagtctccaagtgtcgaaacacatgacgaaactctctgggagggttctcttgcccccaaaattaaagcttggcagcagtgggcgcatcaaggacataacaccggaccgatttgatcgacagtggagctttctggatagccatgttgcagagggttccaagatcaagagttgggccttgataagttttggtggcaccccggagcagcacttttgcattacaaagtttgtgaaccagctatcaaatcggtgtgagcagctaggaattctgctaaacaagaagaccattatcagcccaatatttgagaggattcaactactcaataacgtgggaattttggagggcaagctcaagaaaattcaagaagctgcatcaggcaacttgcagttgctaatctgtgtcatggagaggaggcaccaaggctatgctgatctgaagcgaattgcagaaacatccattggtgttgtgacacaatgttgcctttactccaacttgagcaagctgacctctcaattcttgacgaatttggctttgaagatcaatgcgaaactcggtggctgcaatattgccctatacagcagctttccatgccaaattcctagaatatttttgtcggaggagccggtgatgttcatgggtgctgatgtcacacacccgcatccccttgatgattcaagtccatcagtggttgctgtagttgcaagcatgaattggccgtcagcaaataagtacatctccaggatgagatcacagacacaccggaaagaaatcattgagcaactggatgttatggctggtgaactgcttgaagagtttctaaaagaagtggggaagctcccaagcagaatcatattcttcagagatggtgtgagcgagacacagttctacaaggtgctgaaggaggagatgcatgcagtgcgcacaacttgttcgaggtatccgggttacaaacccttgatcacattcatcgtagttcagaagaggcatcacactagactcttccacagggagaggaatggcagctcgtcacactactctgatcagaacataccaccaggaacagttgtggacactgtgattacacacccaagggaatttgatttctatctgtgcagccactggggcaccaaggggacgagccggccaactcattatcatgttctgtgggatgagaataacttccgttccgacgaagtgcagcagttgatacacaatctttgctacacatttgctcggtgcaccaggccagtttctcttgtcccaccggcttactacgcacatctcgcggcatatagaggcaggctgtaccttgagaggtcagatacaactatgtacagggtcagtccgttgcagactgtgccgctacctaagctcagagacaatgttaagaggctcatgttctactgctagcttcaccgccctgaatttcatggtatcgggactctcctacagtaattttcctcccaaaaaaaaaggtgtttcagatgttatctttaacgtatatcgcctgtcatcgtgtttttctatatttgtccgaattttggaaaatatgtatagtgctcctggacagaaatcctgtgcatcataacatcttacagcagttggcacttagtatttatgcaaaaattctgaaaccaaactgtttcattcccatagatgatgttggtaaggtgggggtttacctatttgtacagtctggatagtgaggaggtcctggagatgaagatactgctgtcgtgttccaaatttaatttcgtttaaattactgctaaaaaaaaaaa

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