LOCUS       NM_001417631            1942 bp    mRNA    linear   PLN 07-MAR-2023
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 6-like
            (LOC4332705), transcript variant 1, mRNA.
ACCESSION   NM_001417631 XM_015773520
VERSION     NM_001417631.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI674699.1, CI764739.1, AK063262.1, CI145358.1 and CI251103.1.
            
            On Mar 7, 2023 this sequence version replaced XM_015773520.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK063262.1, CI145358.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN07627068 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-263               CI674699.1         6-268
            264-392             CI764739.1         261-389
            393-964             AK063262.1         229-800
            965-1614            CI145358.1         1-650
            1615-1942           CI251103.1         272-599
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1942
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /note="WUSCHEL-related homeobox 6-like"
                     /db_xref="GeneID:4332705"
     exon            1..1012
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    76..78
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /note="upstream in-frame stop codon"
     CDS             220..1206
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /note="isoform 1 is encoded by transcript variant 1;
                     LOC_Os03g20910; WUSCHEL-related homeobox 6"
                     /codon_start=1
                     /product="wUSCHEL-related homeobox 6 isoform 1"
                     /protein_id="NP_001404560.1"
                     /db_xref="GeneID:4332705"
                     /translation="

MEGSSNSPDRQSSGGSPPEERGGGGSGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPGAVVHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSALAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVARPP"

     misc_feature    220..354
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10M29.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    340..498
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cl00084"
                     /db_xref="CDD:444687"
     exon            1013..1188
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1942
                     /gene="LOC4332705"
                     /gene_synonym="OsWOX6; WOX6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgcaagcatggtttaattgttgttgcctcctctcaagctagctagctatactactccgatcctctctcgcttattgaaacctagctactgcttcacatgtagcgcgtgctgcaactcgtgttgtgtcactcacacacacatccaagaaccaagattccgaggtaaccaacgctcgatcttttacttaccctatctcccgacgatcgatcgatcgatcgatggaggggagcagtaatagcccggataggcagtcgtcgggcggcagcccgccggaggagcgcggcggcgggggaagcggtggaggaggagggcggagcgccgccggcgagccggtgcggtcgcggtggacgcccaagccggagcagatactgatcctggagtccatcttcaacagcggcatggtcaacccgcccaaggacgagaccgtccgcatccgcaagctgctcgagaggttcggcgccgtcggcgacgccaacgtcttctactggttccagaaccgccgctcgcgctcgcgccgccgccagcgccagatgcaggcggccgccgccgccgccgcagcggcggcctcttcctcttccccatccgccaacacctctcccgcagccgcgagcgccgccaccgtgcaggtgggcctcccgcccggcgccgtcgtccacaccatggccatgggtgggagcgcgtgccagtacgagcagcaggcgagctcgtcgtcgtcgtccggcagcacgggaggttcgtcgctggggctgttcgcgcacggcgcgggggcctccggcgccggcgggtacctgcaggcgtcgtgcggcgcgtccgcgtcggcgtcgtcggcgctggcgcccgggctgatgggggatgtggtggacagcgggggaagcgacgatctcttcgccatctcgaggcagatggggtttgtggggagccctcgctgctcgccggccagctcgccggcgacgccgagctccgcggccaccgccgcgcagcagcagttctactcatgccaattacctgcagcgacgatcacggtgttcatcaacggagtcccaatggagatgccgaggggtccaatagacttgcgagccatgttcggccaggatgtgatgctcgtccactctactggggccctcctcccagtcaacgactatggaatcctaatgcagagcctccaaatcggagagagctactttctggtcgctaggccaccttaaaaacgagttctcgatctatccttgcagtagatagtcagatatatatctctactcgatactcattggatcagatgcatgagccggccggggtgcagctagttctcagttaatcatcaatcaagaatgctgtcttggattcaagaccttggagtatgtctaaatcgatcaatcgtctatcgagaacaagactatatatattagctaggtacgagaagcaaattaatgcatgcattgcagcatatcgatcggcaaaagtacaactacgtacttatatatatgccccttaattaaaaacctatgaaagcgtgggcggtcgagtttgttgtccttagaatacagattacaatatggtcgcgtctcttctcatcattttcacaattccattacaatatgcatgtatgcatgcctgcccttggcagtcgagctatatatattctttaatttgtgctagctatagatgcacgtttgtattgtttttttttaccgtgtgatgtaatgctatatgtgtcagccaaacgcgcctggaatgttggtgcttgattcaaggccggttggaatttaaactaccatttttctttgtacttaatttgtctttagcgtgcagctagccgtgcatatgtcggcaaaggcttgactccttttcactctacagctaagctatcaatgttcaagtgtatactatatatgatatcaacaatatattgagtagtgaagattctaatgtttgtatgcatca

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