LOCUS       NM_001417232            1812 bp    mRNA    linear   PLN 25-MAR-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX21-like (LOC4331774), mRNA.
ACCESSION   NM_001417232 XM_015773780
VERSION     NM_001417232.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Moriguchi K, Suzuki T, Ito Y, Yamazaki Y, Niwa Y and Kurata N.
  TITLE     Functional isolation of novel nuclear proteins showing a variety of
            subnuclear localizations
  JOURNAL   Plant Cell 17 (2), 389-403 (2005)
   PUBMED   15659629
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1, CI677021.1, CI766366.1, BP184690.1, AY554028.1 and
            CI162516.1.
            
            On Mar 1, 2023 this sequence version replaced XM_015773780.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BP184690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04338660, SAMN04338661
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                AP014959.1         3786900-3786998     c
            100-177             CI677021.1         2-79
            178-209             CI766366.1         80-111
            210-212             AP014959.1         3786787-3786789     c
            213-386             CI766366.1         115-288
            387-906             BP184690.1         1-520
            907-1277            AY554028.1         111-481
            1278-1812           CI162516.1         1-535
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1812
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="homeobox-leucine zipper protein HOX21-like"
                     /db_xref="GeneID:4331774"
     exon            1..782
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    102..104
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="upstream in-frame stop codon"
     CDS             129..1229
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="HD-ZIP protein HOX21; Homeodomain transcription
                     factor HOX21; LOC_Os03g07450; OSJNBa0091P11.3"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX21"
                     /protein_id="NP_001404161.1"
                     /db_xref="GeneID:4331774"
                     /translation="

MASNGMASSPSSFFPPNFLLHMAQQQAAPPHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPPPPPHPHNPFLPSSAQCPSLQEFRGMAPMLGKRPMSYGDGGGGGDEVNGGGEDELSDDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNKETEASCSNRSENSSEINLDISRTPPPDAAALDTAPTAHHHHHGGGGGGGGGGGMIPFYTSIARPASGGGVDIDQLLHSSSGGAGGPKMEHHGGGGNVQAASVDTASFGNLLCGVDEPPPFWPWPDHQHFH"

     misc_feature    201..371
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8S7W9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    408..524
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8S7W9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(516..524,528..530,579..581,597..599,636..638,
                     642..647,654..659,663..671,675..680)
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    516..677
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(516..518,525..527,645..647,654..659,666..668)
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    681..815
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8S7W9.1);
                     Region: Leucine-zipper"
     misc_feature    681..806
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    843..989
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8S7W9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1062..1136
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8S7W9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            783..1812
                     /gene="LOC4331774"
                     /gene_synonym="Hox21; OsHox21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccatctctctctctctctctctcacacacacacacacacacacacaacacaaagttctcactctcaaatactcgcgatgcgcctcgccttcctcgcttgatgagctaaggagatcgagttgaggacaatggccagcaatggcatggcgtcctccccttcctccttcttccctccgaacttcctcctccacatggcgcagcagcaagcggcgccgcctcacgacccgcaagaacaccaccaccaccaccaccatggccaccatggccaccaccatgagcagcagcagcagcagcagcatcaccaccacctgggtcctcctccgccgccgccaccgcacccgcacaacccgttcttgccgtcctccgctcaatgcccgtccctccaagaattccgaggcatggcgccaatgctggggaagcggccgatgtcgtacggcgacggcggcggcggcggcgacgaggtgaacggcggcggcgaggacgagctgtcggacgacgggtcgcaggccggggagaagaagcggcggctgaacgtggagcaggtgcggacgctggagaagaacttcgagctcgggaacaagctggagccggagcggaagatgcagctcgcccgcgcgctcgggctgcagccgcgtcaggtggccatctggttccagaaccgccgcgcgaggtggaagacgaagcagctggagaaggactacgacgcgctcaagcgccagctcgacgccgtcaaggccgagaacgacgcgctcctcaaccacaacaagaagctccaagccgagatagtggcgctgaaggggagggaggcggcgtcggagctgataaacctgaacaaggagacggaggcgtcgtgcagcaaccgcagcgagaatagctccgagatcaacctcgacatctcgcgcacgccgccgcccgacgccgccgcgctcgacaccgccccgaccgcgcaccaccaccaccatggcggcggcggcggcggcggcggcggtggcggcatgatcccgttctacacctccatcgcccgccccgccagcggcggcggcgtcgacatcgaccagctcctccacagctcgtcgggcggcgccggcggacccaagatggagcaccacggcggcggcggcaatgtgcaggcggcgtccgtcgacacggccagcttcggcaacctgctctgcggcgtcgacgagccgccgccgttctggccatggcccgatcaccagcacttccactgatcgatcgatccatggatccaaccaaccaaccaaacaaccattggcaacaacaaactatcttgcagtgatgaagcgatcgacagtatgtacggggtgatgaattaacgatgatcacacaccaacgcaagcgcatgcacgtgtgtggaagattcagacgcatgcatttggattaattcttggagagatcgagcaagcttaattgggaagaacaatgagaaggttgtgtatgatgatgatgctagctacgagtattgaggtgatgaatgcattgaatttttctcttgggtttgaagaggatatcgaatcgaaggaacttgtagatgaataagcgagtgagatggaacgacgtacgtagggttagattttggagttcagtagtagtatattctgtcactttttatttattttttttatttattgggttcttattttttcccctttttctttacatacataaatttgtgaactttgtgaggcagtgtttgttgtgtataggtgcatggtgattcttctttcttcccctaatctgtgtggatcatgtccctgtgttgagaaaaatgttcattaaatttcgctctagcaa

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