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2024-04-30 00:08:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001417081            1292 bp    mRNA    linear   PLN 24-FEB-2023
DEFINITION  Oryza sativa Japonica Group nicotinamide/nicotinic acid
            mononucleotide adenylyltransferase-like (LOC4331124), mRNA.
ACCESSION   NM_001417081 XM_015770329
VERSION     NM_001417081.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF337178.1, CA754011.1, AK242265.1 and CF317726.1.
            
            On Feb 24, 2023 this sequence version replaced XM_015770329.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN03003383
                              [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                CF337178.1         2-75
            75-468              CA754011.1         59-452
            469-958             AK242265.1         466-955
            959-1292            CF317726.1         1-334               c
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..1292
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /note="nicotinamide/nicotinic acid mononucleotide
                     adenylyltransferase-like"
                     /db_xref="GeneID:4331124"
     exon            1..230
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..924
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /EC_number="2.7.7.1"
                     /EC_number="2.7.7.18"
                     /note="nicotinamide-nucleotide adenylyltransferase-like;
                     LOC_Os02g56980; NMN adenylyltransferase; NMN/NaMN
                     adenylyltransferase; Nicotinamide mononucleotide
                     adenylyltransferase; Nicotinate-nucleotide
                     adenylyltransferase"
                     /codon_start=1
                     /product="nicotinamide/nicotinic acid mononucleotide
                     adenylyltransferase"
                     /protein_id="NP_001404010.1"
                     /db_xref="GeneID:4331124"
                     /translation="
MEELELPLPTEKLAVDPGREGGKRGVAVLVATGSFNPPTYMHLRMFELAKDELQQRGYSVLGGYMSPVNDAYKKKGLLSAAHRIRLCELACESSSFVMVDRWEAMQKGFQRTLTVLSRIRNALSKDGLADGGSPNVMLLCGSDLLESFSTPGVWIPDQVRIICKDFGVICIRREGKDVEKIISSSEILNECRDNIISVDEIVPNQISSSRVRECIKKCLSIKYLVCDEVIQYIGEHKLYKEADGSDTRK"
     misc_feature    184..894
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /note="nicotinamide-nucleotide
                     adenylyltransferase/nicotinate-nucleotide
                     adenylyltransferase; Region: PLN02945"
                     /db_xref="CDD:178531"
     misc_feature    order(265..279,289..291,295..300,307..309,586..588,
                     592..597,601..603,790..792)
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /note="active site"
                     /db_xref="CDD:185681"
     misc_feature    289..300
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /note="(T/H)XGH motif; other site"
                     /db_xref="CDD:185681"
     exon            231..313
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            314..399
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            400..483
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            484..568
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            569..648
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            649..750
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            751..809
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
     exon            810..1272
                     /gene="LOC4331124"
                     /gene_synonym="OJ1293_E04.25; OsJ_08854"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ctcttccgccctatcgccggcggcgcggctccagcaaagctcggcggcgtgctccggcgaccaaggaggccacggaatactgagaggatcagtggaagtgagggccggacctccttagggcggagtcgaaatttcgtagcagttgagaatcttcgcaggtactggagggcggccatggaggagctggagttgcctctccccacggagaagctcgccgtggatccgggcagggagggaggaaagcgaggtgtggctgtgctcgtggccaccgggagcttcaatcctcccacctacatgcacctgcgcatgtttgaactggcaaaggatgaattgcagcagcgagggtattctgtcttgggtggttacatgtctccggtgaacgatgcttacaagaagaagggccttttatctgcagcccaccgaattcgcttatgcgaactagcatgtgaaagctcatcttttgtgatggttgatcgatgggaggcaatgcagaaaggtttccaacgcaccttgactgttctctcgagaattcggaatgctttgtccaaggatggtttagctgatggaggtagtcccaatgtaatgcttttatgtggttccgacctgctcgaatcattcagcaccccaggagtttggattcctgatcaggtcaggatcatatgtaaggactttggtgttatttgcatacgtagagaaggaaaagatgttgaaaaaataatatccagcagtgagatactgaacgaatgcagggataatattatttcagttgatgagattgttccaaatcaaataagttcgtctagagtaagagaatgcataaaaaaatgcctatcaataaagtatcttgtatgtgatgaagtcatccagtatattggagaacacaaactctacaaggaagctgacggcagtgatacaagaaaatgacaataaagggtccagtgcaggcaatctgaatatagaccttaatatattcacggttaaatgttaggtgcctgttttatagctaataggcaaatgttgtaccctgggcatctgttttgggatatacaactgaattggatgatgagaagcatttgttttatttacaaaaatgaaacatttcgaaataaaaagagcacctgctaattgcatgttgactggaagttgtatcataatacagatagatgagatacttgtcagcagttgtactccaacatgtaatgctggacatatttcctacaaagcttcattgtgtccatgttagtatggttgctgatcacaatatttcagaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]