LOCUS       NM_001416817            3852 bp    mRNA    linear   PLN 19-FEB-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 1A-like (LOC4330281),
            mRNA.
ACCESSION   NM_001416817 XM_015770610
VERSION     NM_001416817.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3852)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3852)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI643962.1, CI658995.1, CB653343.1 and AK111553.1.
            
            On Feb 17, 2023 this sequence version replaced XM_015770610.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK111553.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-402               CI643962.1         2-403
            403-627             CI658995.1         178-402
            628-1203            CB653343.1         44-619
            1204-3852           AK111553.1         1099-3747
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..3852
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="protein argonaute 1A-like"
                     /db_xref="GeneID:4330281"
     exon            1..333
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    267..269
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="upstream in-frame stop codon"
     CDS             294..3542
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="putative argonaute protein; LOC_Os02g45070"
                     /codon_start=1
                     /product="protein argonaute 1A"
                     /protein_id="NP_001403746.1"
                     /db_xref="GeneID:4330281"
                     /translation="

MAFQLDNGYYSHQALAMMRKKKTEPRNAGESSGTQQATGAPGRGPSQRPERAQQHGGGGWQPANPQYAQQAGRGGGQHQGRGGRYQGRGGPTSHQPGGGPVEYQAHEYYGRGVQRQGGMPQHRSGSGGHGVPASPSRTVPELHQASQDQYQATVVAPSPSRTGPSSLPVEASSEEVQHQFQELAIQGQSPTSQAIQPAPPSSKSVRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYDVSITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQDEEESLAVGQGAQRRERPFKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTARYSPVARSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSFPIDNHGTVKTVVQYFQETYGFNIKHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILQTVHHNAYHQDPYAQEFGIRIDERLASVEARVLPPPWLKYHDSGREKDVLPRIGQWNMMNKKMVNGGRVNNWTCINFSRHVQDNAARSFCRELAIMCQISGMDFSIDPVVPLVTARPEHVERALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLFYELDAIRKACASLEADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNVAVRPLPDLKENVKRVMFYC"

     misc_feature    342..737
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6EU14.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    612..893
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="Glycine-rich region of argonaut; Region:
                     Gly-rich_Ago1; pfam12764"
                     /db_xref="CDD:432767"
     misc_feature    852..917
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6EU14.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    882..3539
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    3399..3488
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6EU14.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            334..1013
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1234
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1384
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1518
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1628
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1735
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..1874
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..1991
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1992..2099
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2100..2171
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2172..2294
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..2460
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2461..2582
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2583..2720
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2721..2863
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2864..2926
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2927..2990
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2991..3126
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3127..3200
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3201..3295
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3296..3327
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3328..3852
                     /gene="LOC4330281"
                     /gene_synonym="AGO1A; OJ1493_H11.13; OsAGO1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcgctttctcgcgcgcgagcggccaccacacccaccgccaaatcaaacaccggttctttatctataaggacgcacccctctctctctcgcctccacctcctccaattatttctttgttctcctcctcctgattcgtcgtccgtccctaggaagcaaaaggagaaagtttccactctgtctgcgggatatatcatatatatctcaatcgatccgccattggcgatcgacgaagtgatcaggggctagctcctttgcgctgcggctttgaccgcggtgtcgaagcttcttgcacatggccttccagttggacaacgggtactactcccatcaagctttagccatgatgagaaagaaaaaaactgaaccccgtaatgctggggaaagttctggaactcaacaagccactggagctcctggacggggtccttcacagcgacctgagagagctcaacagcatggaggtggtggttggcaacctgccaatcctcaatatgctcaacaagctggtcgtggtggtggacaacaccagggacgtggtggacgttaccagggtcgtggagggccaacatcacatcaaccaggtggtggtccggttgaatatcaagcacatgagtactatggccgtggtgtccaacggcaaggaggaatgccacaacacaggagtggcagtggtggacatggagttcctgccagtccatcaagaacagttcccgagctgcaccaagcctcacaagaccagtaccaagctacggtggttgcaccatcaccatcaagaactggcccatcttcgctgcctgttgaggccagcagcgaagaagtccaacatcagtttcaggaacttgccatccagggtcaaagccccactagccaggccattcaaccagcaccaccatcgagcaaatcagtgagatttccaatgcgccctggcaagggtacatttggtgataggtgcatcgtgaaagccaaccatttctttgctgaattgcctgacaaagaccttcaccagtatgatgtgtctataactcctgaggttccttcacgtggtgtcaatcgtgctgtcattggagaaattgtaacacaatataggcagtctcatttgggtggccgtcttccagtctatgatggaaggaagagcttatacacagctggtccattaccatttacttctaggacctttgacgttattctgcaggatgaggaagagagccttgctgttgggcaaggtgcacagaggcgtgagagaccatttaaggtcgtgatcaaatttgctgcacgcgctgatctccaccatttagccatgtttttagctggaaggcaagcggatgctcctcaagaagctcttcaagttcttgacattgttctacgtgaattgcctactgcaaggtactctccagttgcaaggtcattttattcgcctaacttaggaaggcgccaacaacttggcgagggcctggaaagttggcgtggtttttaccaaagcatacgacccacgcagatgggactttctctgaatattgatatgtcatcgacagcattcattgagcctctacctgtgattgactttgttgcacagcttttgaacagagacatctcagttagaccattatctgatgctgatcgtgtgaagatcaagaaggccctaaggggtgtaaaggttgaggtcacacatagaggcaatatgcgcaggaagtatcgcatttctggccttacctcgcaagcaacacgagagttgtcttttcccattgataatcatggtactgtgaagacggtggtgcaatacttccaggagacatatggatttaacattaagcacacaactttgccttgcttgcaagtgggcaatcaacaaaggccaaattatctaccaatggaggtctgtaagattgtggagggacagcgttactcaaaaagactaaatgagaagcagataactgctcttcttaaagtgacctgccagcgccctcaagagcgtgagctggacattttgcagactgtgcatcacaatgcataccatcaggatccatatgcacaggagtttggcataaggatcgatgagcgacttgcatctgttgaagctcgtgttctaccacccccctggcttaagtaccacgatagtggcagagagaaggatgtcttgccaagaattggccaatggaatatgatgaataagaaaatggtcaatggtggtagagttaacaactggacatgcatcaatttttctcgtcatgtccaagataatgctgctaggagtttctgtcgcgagcttgctattatgtgccaaatatctgggatggacttctcaattgatcctgtggttcctctagtgactgcaagacctgaacatgtggaaagagcgctcaaggcacgctatcaagaggccatgaatatactgaaaccacagggcggggagcttgacctgctgattgcaatattgcctgacaataatggttctctttatggcgatctcaaaaggatatgtgagactgatcttggattggtctcgcaatgctgtcttacgaagcatgtttttaagatgagcaaacagtatttagcaaacgttgcccttaaaatcaatgttaaggtgggaggaagaaatacagtacttgttgatgctttgacaaggaggattccccttgtgagtgataggccaacgatcatttttggtgctgatgttacacatccccatcctggagaagattctagcccttccattgcagctgttgttgcttctcaagactggcctgaggtcaccaaatatgccggattagtgagtgcacaggcccatcgtcaggaattgatacaggatctttttaaagtatggaaagatcctcaaagaggaactgtaagtggtggaatgatcagagagcttctcatttctttcaagagggcaactggacagaaaccccagaggattatattttacagggatggtgtcagtgaaggacagttttatcaggttctgttttatgagcttgatgccattagaaaggcatgtgcatctttggaagccgattatcagccacccgttacctttgtggtggtccagaagcgtcatcacacaaggctgtttgctaataaccacaaggaccagcgcactgttgacagaagtggaaatatactaccaggcaccgtggttgattcaaagatatgccatcctactgagtttgatttctacctgtgtagccatgcgggcattcagggaacaagtcgccctgcacattatcatgttctgtgggatgagaacaagttcactgctgatggtttgcaaactctgacaaacaacttgtgctacacctatgcaaggtgcacccgttccgtatcaatcgttcctcctgcatattatgcccatctcgcggcatttcgagctcgattttacatggagccggatacttcagatagtgggtcgatggcgagcggtgcccatacccgtggcggtggcccccttcctggtgcacgcagcactaagcctgctgggaatgttgctgtaaggccgcttcctgatctgaaggaaaatgtcaaacgtgtcatgttctactgctaagtttgggaatatttgtgtatgggggaaaacgtctgacggtttgagtcgccccctgttatctaagacggaacgacctatagtgtgtgtacgttaatgattgtggtgctgtgaactatcgaccatgatctggttgtttatctattatcaacactagaagttgaggattctagactctttcagtgtggctactcaaatcatatcgtcgaagaaatgtaataattgacaattacattgctgccatgtttccaggacaagctgatctcagctactgcggttcctttccacttgttggatgcgcaccttgattcgc

//