LOCUS       NM_001409363            1532 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 2
            (LOC4328520), transcript variant 2, mRNA.
ACCESSION   NM_001409363 XM_015770752
VERSION     NM_001409363.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Ito Y, Hirochika H and Kurata N.
  TITLE     Organ-specific alternative transcripts of KNOX family class 2
            homeobox genes of rice
  JOURNAL   Gene 288 (1-2), 41-47 (2002)
   PUBMED   12034492
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF569139.1, CI304983.1, AK243352.1, CB667102.1 and CI131445.1.
            
            On Jul 15, 2022 this sequence version replaced XM_015770752.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020310 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               CF569139.1         9-113
            106-319             CI304983.1         78-291
            320-626             AK243352.1         324-630
            627-982             CB667102.1         510-865             c
            983-1532            CI131445.1         1-550
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..1532
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="homeobox protein knotted-1-like 2"
                     /db_xref="GeneID:4328520"
     exon            1..466
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..1048
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="isoform 2 is encoded by transcript variant 2; KNOX
                     family class 2 homeodomain protein; Homeobox protein
                     HOS58; LOC_Os02g08544"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 2 isoform 2"
                     /protein_id="NP_001396292.1"
                     /db_xref="GeneID:4328520"
                     /translation="

MAFHYPDHGLAMDPSSAAASSPNPSFSPGGGGGGGVGGGEREKAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSDDEDNQVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSGEKTKKKR"

     misc_feature    179..262
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0E3C3.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    269..376
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    449..586
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    755..820
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    order(824..838,842..844,902..904,920..922,959..961,
                     965..970,977..982,986..994,998..1003)
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(830..832,839..841,968..970,977..982,989..991)
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    878..994
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            467..587
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
     exon            588..778
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
     exon            779..910
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1044
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1527
                     /gene="LOC4328520"
                     /gene_synonym="HOS58"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcatccgctcttcttcccctcttccccactcgcaccaaccccaacccccccaaccgccgccgccgccgccgacgacccaccggtcgccgcgtcgccggagtcgcgtactggagaggggggcggagaggcaccagccgccccatggcgttccactacccggaccacggcctcgccatggacccgtcctccgccgcggcgtcgtcgcccaaccctagcttctcccccggaggcgggggcgggggcggggtcgggggaggggagagggagaaggcggccgtcgcggcgcacccgctctacgagcgcctgctcgaggcgcacgtcgcctgcctccgcgtcgccacccccgtggaccagctcccccgcatcgacgcgcagatcgccgcgcgcccgcctcccctcgcagccgcctccgccgccgccgccgccggtggcccctccggtggcgaggagctcgacctcttcatgacacattatgtgttgcttctttgctcattcaaggaacaacttcagcagcatgtgcgtgttcatgcaatggaagcagtgatggggtgctgggaacttgaacagtctttacaaagtctaacaggggcatctcctggtgaagggactggagcgactatgtctgatgatgaagataaccaagtggacagtgaagccaacatgtttgatggaaatgatgggtcagacggcatgggctttggtcccttaatgctgaccgagggtgaaagatccttggttgagcgtgtacggcatgagctgaagaacgagcttaagcaggggtacaaagaaaagcttgtggatattagggaagagatccttcgcaagcggagagctggtaaacttcctggtgatactgcatctatactaaaagcttggtggcaagctcattctaagtggccatacccaactgaagacgacaaggcccgcctggtgcaggaaacggggttacaactgaagcaaatcaacaattggttcattaaccaacgcaaacgaaactggcatagcaacccagcatcctctggtgaaaagaccaagaagaaaaggtgatggtggtgctgagcaatcgtggtagattggttcaacatgaaactagatgtaaacagtaccttttattgtgaagagtgtagtacattctctcgtgctctggtgtgacaaaatctggagaccggcccattcacaagggaattgcgatcataggcgtaatcactgggcaaagaagtcatctgaaattgtagcataagcgcacaaaactgaggtgggtggtatttgactttcgcagtatagcatcgactgtctgctaatgtgattttgtgaaggaatgttctgtataaccgatgaacggaaggaagaattgtattgtgtatgtaattgtgtatcttatttatcatgtaatatatatatgatattaggagctttaagattcggattggatatgttctctgttttgatgcacgatgcagtgttgaggtgtaacatgttttggtaattcactgtgtataaaatatcggagtatatgtgcgtaagctaaaaa

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